Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,786,397 – 7,786,517 |
Length | 120 |
Max. P | 0.849761 |
Location | 7,786,397 – 7,786,517 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.90 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -16.59 |
Energy contribution | -16.65 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.98 |
Structure conservation index | 0.75 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7786397 120 - 27905053 CUCAAAAACUUAAAACAAACUUAUAAUAUAACCCAUAUGUUAUAACCCAUUGAUGAACAAAAAUUAGACUCUUUGGCCUUAGUCGACCUCCUCGACCGUGGGUCCAGAGUAGCCUCCAAA ...............(((..((((((((((.....))))))))))....))).............((.(((((((((((..(((((.....)))))...))).)))))).)).))..... ( -23.50) >DroSec_CAF1 8313 106 - 1 CUCAAAAACUUAAAACAAACUUAUAAUAUAA--------------CCCAUUGAUGAACAAAAAUUAGUGUCUUUGGCCUUAGUCGACCUCCUCGACCGUGGGUCCAGAGUAGCCUCCAAA ...............................--------------..(((((((........))))))).(((((((((..(((((.....)))))...))).))))))........... ( -21.00) >DroSim_CAF1 7535 120 - 1 CUCAAAAACUUAAAACGAACUUAUAAUAUAACCCAUAUGUUAUAACCCAUUGAUGAACAAAAAUUAGUCUCUUUGGUCUUAGUCGACCUCCUCGACCGUGGGUCCAGAGUAGCCUCCAAA ....................((((((((((.....)))))))))).....................((..((((((.(((((((((.....)))))..)))).))))))..))....... ( -22.30) >DroEre_CAF1 8375 100 - 1 CUCAAAAACUUAA-----ACUUAGAAU---------------UAACCCAUUGAUGAACAAAUAUUCGUCUCUUUGGCCUUAGUCGACCUCCUCGACCGUGGGUCCAGAGUAGCCUCCAAA .............-----.........---------------.........((((((......)))))).(((((((((..(((((.....)))))...))).))))))........... ( -21.20) >consensus CUCAAAAACUUAAAACAAACUUAUAAUAUAA___________UAACCCAUUGAUGAACAAAAAUUAGUCUCUUUGGCCUUAGUCGACCUCCUCGACCGUGGGUCCAGAGUAGCCUCCAAA ..................................................................((..(((((((((..(((((.....)))))...))).))))))..))....... (-16.59 = -16.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:32 2006