Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,784,234 – 7,784,341 |
Length | 107 |
Max. P | 0.981514 |
Location | 7,784,234 – 7,784,341 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -17.50 |
Energy contribution | -17.33 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -2.95 |
Structure conservation index | 0.69 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7784234 107 + 27905053 AGGAGCUUCGUCGACGGAGAGUCAAUUCUAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA----CAAU .((..(((((....)))))..))................((...(....).....(((.(((....))).)))............))((((.....))))...----.... ( -24.70) >DroSec_CAF1 6147 111 + 1 AGCCGCUUCGUUCCCAGAACGUCAAUUCAAUUCAAACAAGCAAAGUGAAAACAUCGCUAAGCGAAAGCUAAGCAAACUAACAAGCGCAGCUGAACAAGCUAAACAAACAAU .((.(((((((((...))))).......................((....))...(((.(((....))).)))........))))))((((.....))))........... ( -24.30) >DroEre_CAF1 6237 107 + 1 CGCUGCUUGUUUCUUUUAGCCUCACUUCAAUUCAAAGAAGCAAAGUGAACACAUCGCUGAGCGAACGCUAAGCAACCAAAUAAGCGCAGCUGAACAAGCUAAA----CAAA .((.((((((((.........((((((...(((...)))...)))))).......(((.(((....))).)))....))))))))))((((.....))))...----.... ( -26.90) >consensus AGCAGCUUCGUUCACAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA____CAAU ....(((((.......)))....................((...((....))...(((.(((....))).)))..........))))((((.....))))........... (-17.50 = -17.33 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:31 2006