Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,782,176 – 7,782,410 |
Length | 234 |
Max. P | 0.934448 |
Location | 7,782,176 – 7,782,292 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -26.27 |
Consensus MFE | -19.49 |
Energy contribution | -20.68 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.10 |
Mean z-score | -2.42 |
Structure conservation index | 0.74 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7782176 116 - 27905053 AAUAGAGGAGCUUCGUCGACGGAGAGUCAAUUCUAUUCAAACAAGUAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA----CAAUCUGC ((((((.((.(((((....)))))..))...)))))).......(((...((........(((.(((....))).)))..............((((.....))))...----))...))) ( -24.80) >DroSec_CAF1 4649 120 - 1 AAUAGAGCCGCUUCGUUCCCAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAACAAUCUGC ..((((((.(((((((((...)))))..................((..(((((.....))))).(((....)))..))........))))))((((.....))))..........)))). ( -26.00) >DroSim_CAF1 4656 120 - 1 AAUAGAGCCGCUUCGUUCCCAGAACGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAACAAUCUGC ..((((((.(((((((((...)))))..................((..(((((.....))))).(((....)))..))........))))))((((.....))))..........)))). ( -26.00) >DroEre_CAF1 4857 116 - 1 AAUAUGGCCGCUUGGUGCUCCCAGCGUCAAUUCAAUUAAAUCAAGCAAACUGAAAACAUCGCUGAGCGGAAGCUAAGCAACCAAAUAAGCGCAGCUGAACAAGCUAAACAAA----CUGC ......((.((((((((((..(((((....((((................)))).....)))))(((....))).))).))))....)))))((((.....)))).......----.... ( -28.29) >consensus AAUAGAGCCGCUUCGUUCCCAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAACAAUCUGC ......(.(((((((....))))))).)................(((.............(((.(((....))).)))..............((((.....))))............))) (-19.49 = -20.68 + 1.19)
Location | 7,782,292 – 7,782,410 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -40.52 |
Consensus MFE | -27.33 |
Energy contribution | -28.70 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.16 |
Mean z-score | -1.57 |
Structure conservation index | 0.67 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7782292 118 + 27905053 UAUACUCCG-GCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAAGCAACGAGAACAGUGCGCCGUUUACUGUGUGACAGAGUGAGAGAGCAAUAGUA-CAAAGAGGGAGAGUCAC ....((((.-..(((((((.(((..........((((((((.(((((......)))))..)))))))).....(((.....))).)))))))))).......-(.....)))))...... ( -41.70) >DroSec_CAF1 4769 118 + 1 UAUACUCCGGGCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAAGCAACGAGAACAGUAUGCCG-UUACUGUGUGUCAGAGUGAGAGAGCAUUAGUG-CAGAGAGGGAGAGCCAC .........(((.((((((((.(((....)))..(((((((((((((.....(((...((((((.....-.)))))).))).....)))))))))....)))-).)))).)))).))).. ( -42.50) >DroSim_CAF1 4776 119 + 1 UAUACUCCGGGCGCUCUUUUCGCGAACAUUCGAGUCGCGCUCUCUCGAAGCAACGAGAACAGUAUGCCGCUUACUGUGUGUCAGAGUGAGAGAGCAUUAGUG-CAGAGAGGGAGAGCCAC .........(((.((((((((((((.(......)))))(((((((((.....(((...((((((.......)))))).))).....))))))))).......-..)))).)))).))).. ( -42.50) >DroEre_CAF1 4973 108 + 1 UAUACUCCG-GCGCUCUCUUCGCGAACGUUCGAGACGUUCUCUCUCGAAGCUGCGAGAACAGUAUGCUGUUUAGUAUGUG--AGAAUGA--GAGCAAUAGUGUCUGGGAGGGA------- ....(((((-((((((((..((....))...)))).(((((((((((....(((..((((((....)))))).)))..))--)))..))--))))....)))))..))))...------- ( -35.40) >consensus UAUACUCCG_GCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAAGCAACGAGAACAGUAUGCCGUUUACUGUGUGUCAGAGUGAGAGAGCAAUAGUG_CAGAGAGGGAGAGCCAC ....((((....(((((((.(((..((((....((((((((.(((((......)))))..)))))))).......))))......))))))))))........(.....)))))...... (-27.33 = -28.70 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:30 2006