Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,781,336 – 7,781,456 |
Length | 120 |
Max. P | 0.803674 |
Location | 7,781,336 – 7,781,456 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -47.93 |
Consensus MFE | -47.64 |
Energy contribution | -47.32 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.07 |
Mean z-score | -1.83 |
Structure conservation index | 0.99 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.803674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7781336 120 - 27905053 CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACCGCCGGAGACACACAC .((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((.(((((......)))).).))).. ( -48.70) >DroSec_CAF1 3816 120 - 1 CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACACAC .((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((.(((((......)))).).))).. ( -48.70) >DroSim_CAF1 3824 120 - 1 CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACACAC .((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((.(((((......)))).).))).. ( -48.70) >DroEre_CAF1 4042 120 - 1 CUCAAGGGUGAGCGCAAUGUGCUCAUCUUCGACUUGGGUGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAAGUGCGCUCCACCGCCGGAGACACGCAC .((.(((((((((((...))))))))))).)).(((((..(.((..(((((((((((........)).))))))..)))..)).)..))))).(((((((((......))))...))))) ( -45.60) >consensus CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACACAC .((.(((((((((((...))))))))))).))((((..(((.((..(((((((((((........)).))))))..)))..)).)))..))))(((.(((((......)))).).))).. (-47.64 = -47.32 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:28 2006