Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,780,376 – 7,780,496 |
Length | 120 |
Max. P | 0.666625 |
Location | 7,780,376 – 7,780,496 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.69 |
Mean single sequence MFE | -45.42 |
Consensus MFE | -41.74 |
Energy contribution | -42.55 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.92 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7780376 120 + 27905053 GAAGACGUAGCUCUCCAGGGCAUUUCUAGAGGUUAUUCGCUGGCGAUGCUUCUCGUCCUCGUCGGCGUACUUUUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGCCGUCC ...((((..((((((((((((((.....((((((...(((((((((.((.....))..)))))))))........)))))).......))))((......))..)))).)))))))))). ( -44.30) >DroSec_CAF1 2856 120 + 1 GAAGACGUAGCUUUCCAGGGCAUUUCGAGAGGUUAUGCGCUGGCGCUGCUUCUCGUCCUCGUCGGCGUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC ...(((((..(((((((((.(.....(((((((...(((((((((..((.....))...))))))))))))))))....((((.......))))........).)))).)))))))))). ( -45.60) >DroSim_CAF1 2864 120 + 1 GAAGACGUAGCUUUCCAGGGCAUUCCGAGAGGUAAUGCGCUGGCGCUGCUUCUCGUCCUCGUCGGCGUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC ...(((..(((...((((.(((((((....)).))))).)))).)))(((((((((....((((((..........)))((((.......))))........)))..)))))))))))). ( -47.00) >DroEre_CAF1 3082 120 + 1 GAAGACGUAGCUCUCCAGGGCAUUUCGAGAGGUAAUCCGCUGGCGCUGCUUCUCGUCCUCGUCGGCAUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC ...(((((..(((((((((.(.....((((((((....(((((((..((.....))...))))))).))))))))....((((.......))))........).)))).)))))))))). ( -44.80) >consensus GAAGACGUAGCUCUCCAGGGCAUUUCGAGAGGUAAUGCGCUGGCGCUGCUUCUCGUCCUCGUCGGCGUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC ...(((((..(((((((((.(.....(((((((...(((((((((..((.....))...))))))))))))))))....((((.......))))........).)))).)))))))))). (-41.74 = -42.55 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006