Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,778,822 – 7,778,919 |
Length | 97 |
Max. P | 0.555051 |
Location | 7,778,822 – 7,778,919 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -17.27 |
Energy contribution | -16.80 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.35 |
Mean z-score | -1.84 |
Structure conservation index | 0.61 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7778822 97 + 27905053 --GCCA----UCAUUUAGGCAAAAGACUCAGUCGCAAGGAACGGACCACCCGCUUUAGCGACAACAAGGACGGCAAACAGCAGUCGCAGAGCUUCGUGCAACA --(((.----.......)))..(((.(((.(((((((((..(((.....))))))).)))))......(((.((.....)).)))...))))))......... ( -26.80) >DroVir_CAF1 4911 98 + 1 --GUCAAAAAUGUUAUAGGAAAACGGCUCAGUCGCAAGGAGCGGACAACACGCUUCAGCGACAACAAGGACGGCAAA---CAGCCCCAGAGCUAUGUGAGCCA --......................(((((((((((..((((((.......)))))).))))).....((..(((...---..))))).........)))))). ( -33.30) >DroSim_CAF1 1378 97 + 1 --GCCA----UCAUUUAGGCAAAAGACUCAGUCGCAAGGAACGGACCACCCGCUUCAGCGACAACAAGGACGGCAAAAAGCAGUCGCAGAGCUUCGUGCAACA --(((.----.......)))..(((.(((.(((((...((((((.....))).))).)))))......(((.((.....)).)))...))))))......... ( -27.80) >DroEre_CAF1 1546 97 + 1 --GCCA----UCACUUAGGCAAAAGACUCAGUCGCAAGGAACGGACCACCCGCUUCAGCGACAACAAGGACGGUAAACAGCAGUCGCAGACCUUUGUCCAACA --(((.----.......)))..........(((((...((((((.....))).))).))))).....((((((......((....))......)))))).... ( -26.60) >DroYak_CAF1 1442 97 + 1 --GCCA----UCCCUUAGGCAAACGACUCAGUCGCAAGGAACGGACCACCCGCUUCAGCGACAACAAGGACGGCAAAGGGCAGUCGCAGACCUUCGUGCAACA --(((.----.......)))..((((.((.(((((...((((((.....))).))).)))))......(((.((.....)).)))...))...))))...... ( -26.50) >DroAna_CAF1 4246 97 + 1 UUUCCG----CAG--CGGGAAAACGACUCAGCCGCAAGGAGCGCACCACGCGCUUCAGCGACAACAAGGAUGGCAAAAACCAGUCCCAUAGCUACGUCCAUCA ((((((----...--))))))...(((..((((((..(((((((.....))))))).))).......((((((......))).)))....)))..)))..... ( -29.40) >consensus __GCCA____UCAUUUAGGCAAAAGACUCAGUCGCAAGGAACGGACCACCCGCUUCAGCGACAACAAGGACGGCAAAAAGCAGUCGCAGAGCUUCGUGCAACA ..(((............)))....((((..(((((...((((((.....))).))).)))))..........((.....)))))).................. (-17.27 = -16.80 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:25 2006