Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,118,793 – 1,118,897 |
Length | 104 |
Max. P | 0.529428 |
Location | 1,118,793 – 1,118,897 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -25.04 |
Energy contribution | -26.52 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.14 |
Mean z-score | -1.04 |
Structure conservation index | 0.69 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1118793 104 + 27905053 CGGAAUGGCCUUGCCGAUGGGCUUGCCCAUGCGCAGGCGUAGAUACAAUGGUGGGUCAAGGCAGGCUCGAGCCGGUCGUGGGAUGAGUUCUGU--------G---GAAGAU---AC--AA (((..((((((.(((....((((..((..((((....))))........))..))))..))))))).))..))).(((..(((....)))..)--------)---).....---..--.. ( -35.40) >DroPse_CAF1 58944 117 + 1 CGGUAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAAAUACAAAGGUGGGUCAAGACAGGCUCUUGCCGGACGUGGGAUGAGCUCUAAAUGAAAGUGCGAGAAUAU---ACCAAA .((((((..(((((....(((((((((((((((....))).........((((((((......)))))..)))....))))).)))))))...((....)))))))..)))---)))... ( -42.20) >DroWil_CAF1 55543 98 + 1 CGGUAUAGCCUUGCCAAUGGGUUUACCCAUACGCAGGCGCAAAUAUAAUGGUGGGUCAAGACAGGCUCGUGCUGGACGUGGUAUUAGUUCUG-----------------AA---AU--UG ((((((.(((((((..(((((....)))))..))))).))............(((((......)))))))))))..................-----------------..---..--.. ( -27.30) >DroMoj_CAF1 47476 114 + 1 CGGUAUUGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGGAAAUACAAAGGUGGGUCAGAACAGGCGCGUGCUGGACGCGGUAUAAGCUCUGCAAGCG--AAUGGGAAUAU---AUC-AA ..(((((((((.((((.((((....)))))).))))))...)))))...((((..((....((..(((.(((.(((.((.......)))))))).)))--..)).))...)---)))-.. ( -36.90) >DroAna_CAF1 50164 107 + 1 CGGAAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAGAUACAAUGGUGGGUCAAGGCAGGCGCGUGCCGGACGUGGUAUGAGUUCUGC--------G---UAAAAUUAUAA--AU .....((((((.(((((((((....)))))(((....)))........))))))))))..((((((.(((((((....))))))).).)))))--------.---...........--.. ( -38.60) >DroPer_CAF1 58320 117 + 1 CGGUAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAAAUACAAAGGUGGGUCAAGACAGGCUCUUGCCGGACGUGGGAUGAGCUCUAAAUGAAAGUGAGAGAAUAU---ACCAAA .((((((..((..(((..(((((((((((((((....))).........((((((((......)))))..)))....))))).)))))))....))...)..))....)))---)))... ( -37.40) >consensus CGGUAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAAAUACAAAGGUGGGUCAAGACAGGCUCGUGCCGGACGUGGGAUGAGCUCUGA________G___GAAUAU___AC__AA .....((((((.(((.(((((....)))))(((....))).........)))))))))...(((((((((.(((....))).)))))).)))............................ (-25.04 = -26.52 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:35 2006