Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,775,973 – 7,776,093 |
Length | 120 |
Max. P | 0.520550 |
Location | 7,775,973 – 7,776,093 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.17 |
Mean single sequence MFE | -47.12 |
Consensus MFE | -35.20 |
Energy contribution | -36.88 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.12 |
Mean z-score | -1.53 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7775973 120 + 27905053 AGCACUGAGACACCCCCACCGCCAGCACCUUUGGUUACGCAAUCCCAAUGGCUGGCGGGCACCGAAGUGGCUGGUCAGAUCCCAGACGCCUCCAACGGAGCGGGUUUGUAGAAGAUCCAA ....((...(((..(((.((((((((....((((..........))))..))))))))((.(((..(.(((..(((........)))))).)...))).)))))..)))...))...... ( -43.70) >DroSec_CAF1 73204 120 + 1 AGCUCUGAGACGCCGCUACCGCCAGCUCCUUUGGUUACGCAAUCCCAAUGGCUGGCGGGCAGCGAAGUGGCUGGUCAGAUCCCAGACGCCUCCAAUGGAGCGGGUUUGUAGAAGAUCCAA .((((((((....((((.(((((((((...((((..........)))).)))))))))..))))..(((.((((.......)))).))))))....)))))((((((.....)))))).. ( -49.50) >DroSim_CAF1 76446 120 + 1 AGCUCUGGGACGCCCCCACCGCCAGCUCCUUUGGUUACGCAAUCCCAAUGGCUGGCGGGCAGCGAAGUGGCUGGUCAAAUCCCAGACGCCUCCAACGGAGCGGGUUUGUAGAAGAUCCAA .((((((((((((.....(((((((((...((((..........)))).)))))))))...)))..(((.((((.......)))).))).)))..))))))((((((.....)))))).. ( -49.40) >DroEre_CAF1 73650 120 + 1 GGCUCUGAGACGCCACCACCGCCAGCUCCUGUGGUUACGCAAUCCCAAUGGCUGGCGGGCAGCGAGUUGCCUGGUCACAUCCUUGACGCCUCCAACGGAGCGGGUUAGUAGAGGAUCCAA (((........)))((((.((((((((..((.((((....)))).))..))))))))(((((....)))))))))...(((((((((.(((((...)))).).)))....)))))).... ( -44.20) >DroYak_CAF1 74031 120 + 1 GGCUCUGAGACGCCGCCACCGCCAGCUCCCAUUGUUACGCAAUCCCAAUGGCUGGCGGGUGGCGAAUUGCCUGGUCAUGUCCUUGACGCCUCCAACGGAGCGGGUUAGUAGAGUAUUUAA .((((((...(((((((..((((((((...((((.....))))......)))))))))))))))....(((((((((......))))..((((...)))))))))...))))))...... ( -48.80) >consensus AGCUCUGAGACGCCCCCACCGCCAGCUCCUUUGGUUACGCAAUCCCAAUGGCUGGCGGGCAGCGAAGUGGCUGGUCAGAUCCCAGACGCCUCCAACGGAGCGGGUUUGUAGAAGAUCCAA .((((((...........(((((((((...((((..........)))).))))))))).....((.(((.((((.......)))).))).))...))))))((((((.....)))))).. (-35.20 = -36.88 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:23 2006