Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,774,312 – 7,774,408 |
Length | 96 |
Max. P | 0.794785 |
Location | 7,774,312 – 7,774,408 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -18.79 |
Consensus MFE | -11.01 |
Energy contribution | -11.95 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.12 |
Mean z-score | -1.94 |
Structure conservation index | 0.59 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7774312 96 - 27905053 GCCAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACCAUUA--CAAAUAUGUAAUUUGCUGUCGAUUGCUUUUGCACUGGA----- .((((((((........))))).........(((((((((((.(...((((...((((--((....))))))))))..).)))))))))))...))).----- ( -22.40) >DroGri_CAF1 82202 96 - 1 GUGAAGCAACAAUUUAAUUGCAU-------ACUAAAACAGUUCAAUUACACACAAUUACACAAAUACGUAAUUUGCUUUGAAUUGCAUUUGCUAUUGGCUAUU ....(((((((((((((..(((.-------.........((......))....((((((........))))))))).))))))))...))))).......... ( -14.40) >DroEre_CAF1 72140 96 - 1 GCAAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACCAUUA--CAAAUAUGUAAUUUGCUUUCGAUUGCAUUUGCAUUGGA----- ((((((((((((((.(((((((.............))))))).))))((((...((((--((....))))))))))....).)))).)))))......----- ( -21.12) >DroYak_CAF1 72444 96 - 1 GCGAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACCAUUA--CAAAUAUGUAAUUUGCUGUCGAUUGCAUUUGAAUUGGA----- ..(((((((........)))))..))...........((((((((.(((((.(.((..--(((((.....)))))..)).).))))).))))))))..----- ( -20.90) >DroMoj_CAF1 77689 89 - 1 GUGCAGCAACAAUUUAAUUGUGA-------ACUAAAACAGUUCAAUUACAAGCAAUUA--CAAAUAUUUAAUUUACUUUCAAUUGCAUUUGCGCCUGG----- ((((((..............(((-------(((.....)))))).......((((((.--....................))))))..))))))....----- ( -14.60) >DroAna_CAF1 86338 94 - 1 GCGAAGCAACAAUUUAAUUGCUAUUGAGUUUAAAAAGCAGUUCAAUUGCAAACAAUAA--CAAAUAUGUAAUUUGCC-CCGAUUGCAUUUGCAUUGG------ ((((((((((((((.(((((((.((.......)).))))))).)))))..........--(((((.....)))))..-....)))).))))).....------ ( -19.30) >consensus GCGAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACAAUUA__CAAAUAUGUAAUUUGCUUUCGAUUGCAUUUGCAUUGGA_____ ((((((((((((((.(((((((.............))))))).)))))............(((((.....))))).......)))).)))))........... (-11.01 = -11.95 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:17 2006