Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,771,604 – 7,771,706 |
Length | 102 |
Max. P | 0.709118 |
Location | 7,771,604 – 7,771,706 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -39.17 |
Consensus MFE | -26.30 |
Energy contribution | -26.97 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.29 |
Mean z-score | -1.74 |
Structure conservation index | 0.67 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7771604 102 + 27905053 UGCGCUGGGGAGCAGACCGACCAGGUCUGGUUUUUGGGCCGGGAAUCGCAAUCCGAGGUGGAAUCGGAA-GGCGGCCCAAAAGGGGG-AAGCUCCGAGUAGUGU .((((((.((((((((((.....)))))..(((((((((((.....)((..(((((.......))))).-.))))))))))))....-..)))))...)))))) ( -45.70) >DroSec_CAF1 68785 103 + 1 UGCGCUGGGGAGCAGGCCGACAUGGUCUGGUUUUUGGGCCGGGAAUCGCAAUCCGAGGUGGAAUCGGAA-GGCGGCCUAAAGGGGGGUUAGCUCCGAAUAGUGU .((((((.(((((..(((..(..((((..(...)..))))(((...(((..(((((.......))))).-.))).)))....)..)))..)))))...)))))) ( -42.80) >DroSim_CAF1 72037 103 + 1 UGCGCUGGGGAGCAGGGCGACCGGGUCUGGUUUUUGGGCCGGGAAUCGCAAUCCGAGGUGGAAUCGGAA-GGCGGCCUAAAGGGGGGUUAGCUCCGAAUAGUGU .((((((.(((((...((((((.((((..(...)..)))).))..))))..(((.((((.(...(....-).).))))...)))......)))))...)))))) ( -42.40) >DroEre_CAF1 69272 101 + 1 UGCGCUGGGGAGCAGACCGACC-GGUCUGGUUUUUGGGCCGGGAAUCGCAAUCCAAGGUGGAAUCGGGA-GGCGGCCCAAAAGGGGG-AAGCACCGAAUUGUGU .((.(..((((.((((((....-)))))).))))..))).......((((((((.....))).((((..-.((..(((......)))-..)).)))).))))). ( -39.60) >DroYak_CAF1 69525 101 + 1 UGCGCUGUGGAGCAGACCGACC-GGUCUGGUUUUUGGGCCGGGAAUCGCAAUCCAAGGUGGAAUCGGGA-GGCGGCCUAGAAGGGGG-AAGCACCGAAUUGUGU .((((..(((.(((((((....-)))))..(((((((((((....(((...(((.....)))..)))..-..)))))))))))....-..)).)))....)))) ( -36.40) >DroAna_CAF1 83468 87 + 1 UGCGCCCGGGAGCGGACUG----GGUCUGGUUU-UGGGCUCCAAUUCGGAAUC---GGGGGAAUGGGAAUGGCAACACUGUAUGG---------CGUAUGGCGU (((((((((((.(((((..----.))))).)))-)))))(((.((((......---....)))).)))...)))((.((((((..---------.)))))).)) ( -28.10) >consensus UGCGCUGGGGAGCAGACCGACC_GGUCUGGUUUUUGGGCCGGGAAUCGCAAUCCGAGGUGGAAUCGGAA_GGCGGCCCAAAAGGGGG_AAGCUCCGAAUAGUGU .((((((.((..((((((.....)))))).(((((((((((....(((...(((.....)))..))).....)))))))))))..........))...)))))) (-26.30 = -26.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:16 2006