Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,770,885 – 7,770,982 |
Length | 97 |
Max. P | 0.891827 |
Location | 7,770,885 – 7,770,982 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.93 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -21.67 |
Energy contribution | -22.03 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.26 |
Mean z-score | -1.91 |
Structure conservation index | 0.87 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7770885 97 + 27905053 UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU (((((..(((((.......(((......)))((.....))...)))))..))))).......(((((((((..(((....)))...))))))))).. ( -27.60) >DroSec_CAF1 68059 97 + 1 UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCACCGCCCCAAAAGAACCAACUAAAAGUGAGUCCCGGAAAACUUUAAGCUCACUUUAU (((((..(((((....((....))...(((.((.....))))))))))..))))).......(((((((((...((....))....))))))))).. ( -26.20) >DroSim_CAF1 71316 97 + 1 UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU (((((..(((((.......(((......)))((.....))...)))))..))))).......(((((((((..(((....)))...))))))))).. ( -27.60) >DroEre_CAF1 68544 97 + 1 UUUUUCGGCGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCUCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU .((((((((((....((.....)).)).))))))))..........................(((((((((..(((....)))...))))))))).. ( -21.40) >DroYak_CAF1 68770 97 + 1 UUUUUCGGCGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCGCAAAGGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU ..((((.(((((.......(((......)))((.....))...)))))...)))).......(((((((((..(((....)))...))))))))).. ( -27.10) >DroAna_CAF1 82947 88 + 1 UUUUUCGG-GGCAGUCCCAGACGG-----UCGAAAACCUCAACGC-GUAGAAGAACCCACUGAAAGUUGGC-CUGGAAAACUUUAAGCUCGCUU-AG .(((((.(-(((.(((...)))((-----(.....))).((((..-.(((.........)))...))))))-)).)))))...((((....)))-). ( -19.70) >consensus UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU (((((..(((((.......(((......)))((.....))...)))))..))))).......(((((((((..(((....)))...))))))))).. (-21.67 = -22.03 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:15 2006