Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,769,463 – 7,769,554 |
Length | 91 |
Max. P | 0.706596 |
Location | 7,769,463 – 7,769,554 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -17.85 |
Consensus MFE | -11.37 |
Energy contribution | -11.73 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.28 |
Structure conservation index | 0.64 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7769463 91 - 27905053 ----AAACGAUGCA-AAGUUCGCGG-----CUC-AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC ----...(((....-....))).((-----((.-...............(......)....((((((((((........)))))))))).))))........ ( -17.50) >DroVir_CAF1 84142 84 - 1 ----AAA--UUGCAAAAGUUCGCUGUCGUUCUAAAACCACUUUUCAUUAGUAACA------ACCGCUAAUUUCACU------UAGUGGUAUGCCAACAUGUC ----...--........(((.((....(((((((............)))).))).------((((((((......)------)))))))..)).)))..... ( -14.60) >DroPse_CAF1 124543 94 - 1 GAGCAAAUAGCACC-AAGUUCUUGG-----CUU-AAACAAUUUUCAUGAGCAACAA-AAGAACCGCUAAUUUCACUUACAAUUAGCGGUAUGCCAACAUGUC (.(((.........-....((((.(-----(((-(...........))))).....-))))((((((((((........)))))))))).))))........ ( -20.20) >DroSec_CAF1 66637 91 - 1 ----AAACGAUGCA-AAGUUCGCGG-----CUC-AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC ----...(((....-....))).((-----((.-...............(......)....((((((((((........)))))))))).))))........ ( -17.50) >DroSim_CAF1 69892 91 - 1 ----AAACGAUGCA-AAGUUCGCGG-----CUC-AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC ----...(((....-....))).((-----((.-...............(......)....((((((((((........)))))))))).))))........ ( -17.50) >DroAna_CAF1 80439 90 - 1 ----AAAUGACGCA-AAGUUCUCGG-----CUU-GAACAAUUUUCAUUAGCAACAACAA-AACCGCUAAUUUCACUUACAAUUAGCGGUGUGCCCACAUGUC ----..(((..(((-..(((....(-----(((-(((.....))))..)))...)))..-.((((((((((........)))))))))).)))...)))... ( -19.80) >consensus ____AAACGAUGCA_AAGUUCGCGG_____CUC_AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC .............................................................((((((((((........))))))))))............. (-11.37 = -11.73 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:14 2006