| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,765,371 – 7,765,505 |
| Length | 134 |
| Max. P | 0.993867 |
| Location | 7,765,371 – 7,765,470 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 93.82 |
| Mean single sequence MFE | -21.56 |
| Consensus MFE | -19.48 |
| Energy contribution | -19.36 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.993867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7765371 99 + 27905053 GAGCAAA-AAA-UGUGAUAAACGACCUGGUAAAAGGAGAAAAACGCGAAGGGGCA-AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCC ..((...-...-(((.....))).(((......)))........))...(((...-.(((((((((((.((....)).)))))))))))..........))) ( -21.04) >DroSec_CAF1 62452 100 + 1 GAGCAAA-AAACGGUGAUAAACGACCUGGUAAAAGGAGAAAAACGCGAAGGGGCA-AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACACAAACCC ..((...-...((........)).(((......)))........))...(((...-.(((((((((((.((....)).)))))))))))..........))) ( -21.84) >DroSim_CAF1 65737 101 + 1 GAGCAAA-AAACUGUGAUAAACGACCUGGUAAAAGGAGAAAAACGCGAAGGGGCAAAGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACACAAACCC .......-....((((........(((......)))........((......))...(((((((((((.((....)).)))))))))))....))))..... ( -22.50) >DroEre_CAF1 62802 98 + 1 AAGCAAA-AAA-UGUGAUAAACGACCUGGUAAAAGGAGAAAAACGCGC-GGGGCA-AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCC ..((...-...-((((........(((......))).........)))-)..)).-.(((((((((((.((....)).)))))))))))............. ( -21.23) >DroYak_CAF1 63048 99 + 1 AAGCAAAAAAA-UGUGAUAAACGACGUGGUAAAAGGAGAAAAACGUGC-GGGGCG-CGGGGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCC ..........(-(((........))))(((.............(((((-...)))-))((((((((((.((....)).))))))))))..........))). ( -21.20) >consensus GAGCAAA_AAA_UGUGAUAAACGACCUGGUAAAAGGAGAAAAACGCGAAGGGGCA_AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCC ..((.........((.....))..(((......)))........))...(((.....(((((((((((.((....)).)))))))))))..........))) (-19.48 = -19.36 + -0.12)
| Location | 7,765,399 – 7,765,505 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.16 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -14.93 |
| Energy contribution | -17.69 |
| Covariance contribution | 2.77 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.974314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7765399 106 + 27905053 AAAAGGAGAAAAACGCGAAGGGGCA-AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCCACAUAUAUGUAUGCAAAAAAUCCACGAGGAAUUUA ....(((.......(((..(((...-.(((((((((((.((....)).)))))))))))..........)))(((....))).)))......)))............ ( -22.06) >DroSec_CAF1 62481 106 + 1 AAAAGGAGAAAAACGCGAAGGGGCA-AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACACAAACCCACAUAUAUGUAUGCAAAAAUUCCACGAGGAAUUUA ..............(((..(((...-.(((((((((((.((....)).)))))))))))..........)))(((....))).)))..(((((((....))))))). ( -25.24) >DroSim_CAF1 65766 107 + 1 AAAAGGAGAAAAACGCGAAGGGGCAAAGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACACAAACCCACAUAUAUGUAUGCAAAAAUUCCACGAGGAAUUUA ..............(((..(((.....(((((((((((.((....)).)))))))))))..........)))(((....))).)))..(((((((....))))))). ( -25.66) >DroEre_CAF1 62830 101 + 1 AAAAGGAGAAAAACGCGC-GGGGCA-AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCCACAUAUA----UGCAAAAAUUCCACGAGGAAUUUA ....((........((..-...)).-.(((((((((((.((....)).)))))))))))...........)).......----.....(((((((....))))))). ( -23.80) >DroYak_CAF1 63077 101 + 1 AAAAGGAGAAAAACGUGC-GGGGCG-CGGGGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCCACAUAUA----UGCAAAAAUUCCACGAGGAAUUUA ....((.......(((((-...)))-))((((((((((.((....)).))))))))))............)).......----.....(((((((....))))))). ( -26.30) >DroAna_CAF1 76779 83 + 1 -------------------CNNNNN-NNNNNNNNNNNNNNNNNNNNUGGAGCAAUUUUUAUAACAGAAACCCACAUAUC----UCCGCAAAUUCCGCAAGGAAUUCG -------------------......-.....................((((...........................)----)))...((((((....)))))).. ( -10.53) >consensus AAAAGGAGAAAAACGCGA_GGGGCA_AGGAGAUUGUUCAACGCAAGUGGAGCAAUUUUUAUAACAGAAACCCACAUAUA____UGCAAAAAUUCCACGAGGAAUUUA ...................(((.....(((((((((((.((....)).)))))))))))..........)))................(((((((....))))))). (-14.93 = -17.69 + 2.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:13 2006