Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,755,817 – 7,755,917 |
Length | 100 |
Max. P | 0.619033 |
Location | 7,755,817 – 7,755,917 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -20.95 |
Consensus MFE | -8.67 |
Energy contribution | -9.45 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.21 |
Structure conservation index | 0.41 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7755817 100 + 27905053 AGCGGUAUCCAA----------AAAUAAGG-AAAAGGAUA----GCGGUGAGAGAAAUGUUUCUGCAAAUGCAAUAUUGUUAUGCUGUAAUG-----GUAUAAAAUGUAUGCAUAUGUUU ..((.(((((..----------........-....)))))----.))...(((((....)))))(((.((((((((((.(((((((.....)-----))))))))))).))))).))).. ( -23.34) >DroSec_CAF1 52963 101 + 1 AGCGGUAUCCAA---------AAAAUAAGA-AAAAGGAUA----GCGGUGAGAAAAAUGUUUCUGCAAAUGCAAUAUUGUUAUGCUGUAAUG-----GUAUAAAAUGUAUGCAUAUGUUU ..((.(((((..---------.........-....)))))----.))...(((((....)))))(((.((((((((((.(((((((.....)-----))))))))))).))))).))).. ( -23.16) >DroSim_CAF1 56124 101 + 1 AGCGGUAUCCAA---------AAAAUAAGG-AAAAGGAUA----GCGGUGAGAGAAAUGUUUCUGCAAAUGCAAUAUUGUUAUGCUGUAAUG-----GUAUAAAAUGUAUGCAUAUGUUU ..((.(((((..---------.........-....)))))----.))...(((((....)))))(((.((((((((((.(((((((.....)-----))))))))))).))))).))).. ( -23.26) >DroWil_CAF1 108133 119 + 1 AACAACACACACACAUAAAAAAAAAAAACCAAAAUGAAUAUAAACCCGACAAAAAAAUGUUUCUGCAAAUGCAAUAUUGUAAUGCUGUAAUGUGUGGGGAU-AAAUGUAUGCAUAUCUCU .........(((((((...............................((((......))))...(((..((((....)))).)))....)))))))(((((-(..((....)))))))). ( -17.50) >DroYak_CAF1 53590 101 + 1 AGCGGUAUCCAA---------AAAAUAAGG-AAAAGGAUA----GCGGUGAGAGAAAUGUUUCUGCAAAUGCAAUAUUGUUAUGCUGUAAUG-----GUAUAAAAUGUAUGCAUAUGUUU ..((.(((((..---------.........-....)))))----.))...(((((....)))))(((.((((((((((.(((((((.....)-----))))))))))).))))).))).. ( -23.26) >DroPer_CAF1 110324 85 + 1 --------G--------------AG--UGG-GAGUG---G----GAAGCGAGAGAAAUGUUUCAGCAAAUGCAAUAUUGUAAUGCCGUAAUGCC---GUAUAAAAUGUAUGCAUAUGUUU --------.--------------..--...-.....---.----((((((.......))))))((((.((((((((((...((((.(.....).---))))..))))).))))).)))). ( -15.20) >consensus AGCGGUAUCCAA_________AAAAUAAGG_AAAAGGAUA____GCGGUGAGAGAAAUGUUUCUGCAAAUGCAAUAUUGUUAUGCUGUAAUG_____GUAUAAAAUGUAUGCAUAUGUUU ..................................................(((((....)))))(((.((((((((((.((((((............))))))))))).))))).))).. ( -8.67 = -9.45 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:11 2006