Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,751,500 – 7,751,607 |
Length | 107 |
Max. P | 0.977807 |
Location | 7,751,500 – 7,751,607 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -22.02 |
Energy contribution | -23.02 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.25 |
Structure conservation index | 0.85 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7751500 107 + 27905053 CUACUGGCAUUCACACAUGUCCCUGUCCCUGUCCCUGUCCCUGUCCUUGUCCCUGUAUCUAUCCCUGUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAUGGGCGG .....(((((......))))).............((((((.((.....(((...((((.....((((((..........))))))))))..)))....)).)))))) ( -20.10) >DroSec_CAF1 48682 89 + 1 CUCCUGGCAUUCACACAUGUCCCUGUCCCUG------------------UCCCUGUAUCUGUCCCUUUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCAG .....(((((......))))).......(((------------------((((((.....(((......((((((....))))))......)))....))))))))) ( -28.50) >DroSim_CAF1 50529 95 + 1 CUCCUGGCAUUCACACAUGUCCCUGUCCCUG------------UCCUUGUCCCUGUAUCUGUCCCUUUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCAG .....(((((......))))).(((((((((------------.....(((...((((...........((((((....))))))))))..)))....))))))))) ( -27.20) >DroEre_CAF1 48864 84 + 1 CUCCUGGCAUUCACACAUGUCC-----------------------CCUGUCCCUGUCCCUGUCCCCAUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCGG .....(((((......))))).-----------------------.(((((((((.....(((......((((((....))))))......)))....))))))))) ( -27.80) >consensus CUCCUGGCAUUCACACAUGUCCCUGUCCCUG______________CUUGUCCCUGUAUCUGUCCCUUUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCAG .....(((((......))))).........................(((((((((.....(((......((((((....))))))......)))....))))))))) (-22.02 = -23.02 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:09 2006