Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,732,103 – 7,732,194 |
Length | 91 |
Max. P | 0.605765 |
Location | 7,732,103 – 7,732,194 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.80 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -13.87 |
Energy contribution | -15.87 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.59 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7732103 91 - 27905053 GCCCACUCAAGAAGUGGAGCACCAACCCCCACCUCGGCCAUCCGGCGAACGCCAUCAGGCUUAUGAAUAAAUUAAAAGGGAA--AACCCCACC (((((((.....))))).))...............((((....(((....)))....))))................(((..--...)))... ( -22.80) >DroSec_CAF1 29129 91 - 1 GCCCACUCAAGAAGUGGAGCACCAGCCCACACCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA--AACCCCACC (((((((.....))))).))...........((((((((....))))...(((....)))...............))))...--......... ( -27.80) >DroSim_CAF1 29108 91 - 1 GCCCACUCAAGAAGUGGAGCACCAACCCACACCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA--AACCCCACC (((((((.....))))).))...........((((((((....))))...(((....)))...............))))...--......... ( -27.80) >DroEre_CAF1 29048 90 - 1 GCCCACUCAAGAAGUAGAGCACCA-CCCCCUCCUCGGCCAUCCGGCGAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA--AACCCCACC (((.(((.....))).).))....-..(((((....(((....)))....(((....)))...............)))))..--......... ( -19.70) >DroWil_CAF1 85757 74 - 1 CCCCACUCAAGAAGUGGGCUAUGU-----------------CAGGC--GUGCCACCAGGCUUAUGAAUAAAUUAAGAAAAAAGCAAGCCAACC .((((((.....))))))......-----------------..(((--.(((.......((((.........))))......))).))).... ( -18.12) >DroYak_CAF1 29365 90 - 1 GCCCACUGAAGAAGUAGAGCAGCA-CCCCCUCCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGUA--AACCCCACC (((.(((.....))).).))....-..(((((...((((....))))...(((....)))...............)))))..--......... ( -24.00) >consensus GCCCACUCAAGAAGUGGAGCACCA_CCCCCACCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA__AACCCCACC (((((((.....))))).))...........((((.(((....)))....(((....)))...............)))).............. (-13.87 = -15.87 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:01 2006