Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,720,261 – 7,720,357 |
Length | 96 |
Max. P | 0.590048 |
Location | 7,720,261 – 7,720,357 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -29.70 |
Energy contribution | -29.40 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.29 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7720261 96 + 27905053 UAAGACGAUUUUGAUUAUUGCGCGGCUGAAUGGUGGCAUACGUGUUGUCCACCGUCUGGCCCACAUGAUGAACCUGCUCAAGAGAGCUACGA---UGGU .....((...((.(((((.(.(.((((..(((((((((.......)).)))))))..))))).)))))).))...((((....))))..)).---.... ( -28.80) >DroVir_CAF1 29416 93 + 1 UCAGGCGAUUCUGAUUGUUGCGUGGUUGUAUGGUGGCAUACGUAUUGUCCACCGACUGGCC---AUGAUGCACCUGCUCCAGCGAGCUGCGG---UGAU (((((....)))))......(((((((((.((((((((.......)).)))))))).))))---)))...((((.((((....))))...))---)).. ( -31.90) >DroPse_CAF1 65253 99 + 1 UGAGACGAUUCUGGUUGUUGCGCGGCUGGAUGGUGGCAUAGGUAUUGUCCACCGUCUGGCCCACAUGGUGGACCUGCUCCAGCGAGCUGCGAUGAUGAU .............((..(((((((((..((((((((((.......)).))))))))..)))....((.((((.....)))).)).)).))))..))... ( -40.30) >DroGri_CAF1 29521 93 + 1 UCAAACGAUUCUGAUUAUUACGCGGCUGAAUGGUGGCGUACGUAUUGUCCACCGUUUGGCC---AUGAUGCACCUGCUCCAGCGAGCUGCGG---UGAU .......................(((..((((((((((.......)).))))))))..)))---......((((.((((....))))...))---)).. ( -33.10) >DroMoj_CAF1 23034 93 + 1 UCAGGCGAUUCUGAUUGUUGCGUGGCUGGAUGGUGGCAUACGUGUUGUCCACCGACUGGCC---AUGAUGCACCUGUUCCAGGGAACUGCGA---UGAU (((.(((.(((....(((..((((((..(.((((((((.......)).)))))).)..)))---)))..)))((((...))))))).)))..---))). ( -36.60) >DroPer_CAF1 64993 99 + 1 UGAGACGAUUCUGGUUGUUGCGCGGCUGGAUGGUGGCAUAGGUAUUGUCCACCGUCUGGCCCACAUGGUGGACCUGCUCCAGCGAGCUGCGAUGAUGAU .............((..(((((((((..((((((((((.......)).))))))))..)))....((.((((.....)))).)).)).))))..))... ( -40.30) >consensus UCAGACGAUUCUGAUUGUUGCGCGGCUGGAUGGUGGCAUACGUAUUGUCCACCGUCUGGCC___AUGAUGCACCUGCUCCAGCGAGCUGCGA___UGAU ...((((((....)))))).((((((((((((((((((.......)).)))))))))))))..............((((....)))).)))........ (-29.70 = -29.40 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:00 2006