Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,719,229 – 7,719,319 |
Length | 90 |
Max. P | 0.976313 |
Location | 7,719,229 – 7,719,319 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.78 |
Mean single sequence MFE | -16.37 |
Consensus MFE | -15.67 |
Energy contribution | -15.62 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.20 |
Mean z-score | -1.39 |
Structure conservation index | 0.96 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7719229 90 - 27905053 AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU ......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70) >DroSec_CAF1 16213 90 - 1 AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU ......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70) >DroSim_CAF1 16232 90 - 1 AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU ......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70) >DroEre_CAF1 16245 90 - 1 AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAA ......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70) >DroYak_CAF1 16280 90 - 1 AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUAAAUAC ......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70) >DroAna_CAF1 30906 89 - 1 AGUUACCAUUGACCGCUGUCCAGGUCCUCACGGACAGAGCCAGAAACUCAUUUGUGUUUGCAUUUACAUCAAAUAUAUU-AUAUGAAUAA ........(((....((((((..(....)..))))))...)))....((((.((((((((.((....))))))))))..-..)))).... ( -14.70) >consensus AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU ......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. (-15.67 = -15.62 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:59 2006