Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,717,723 – 7,717,817 |
Length | 94 |
Max. P | 0.734598 |
Location | 7,717,723 – 7,717,817 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.61 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -16.21 |
Energy contribution | -17.22 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.26 |
Mean z-score | -1.49 |
Structure conservation index | 0.64 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7717723 94 - 27905053 UCUGGAACA---------------GAUUCCUCAUCUUCCUGCAGCAGCUGGUUGCGCAUUGCUUCCAACUCUUCUUCGGAAGGAAGAGUGCCCUUUAGCUCCUCCAUUU ...(((..(---------------(((.....)))))))((.((.((((((..(.(((((.(((((.....(((....))))))))))))))..)))))).)).))... ( -25.80) >DroPse_CAF1 61864 109 - 1 UCUGGGACAGCAGCUACCUCGUCAUCAUCAUCAUCUUCGUGAGGCAAUUUAUUACGCAUUGCCCGCAACUCCUCCUCUGAGGGCAGAGUGUCCUUUAGAUCUUCCAUUU (((((((((.(.((........................(((.((((((.........)))))))))....((((....)))))).)..))))))..))).......... ( -24.50) >DroSec_CAF1 14695 94 - 1 UCUGGAACA---------------UAUUCCUCAUCUUCCUGUAGCAGCUGGUUGCGCAUUUCUUCCAACUCUUCUUCGGAAGGUAGAGUGCCCUUUAGCUCCUCCAUUU ...((((..---------------..)))).........((.((.((((((..(.(((((.((....((.((((....))))))))))))))..)))))).)).))... ( -22.00) >DroEre_CAF1 14748 94 - 1 UCUGGAACA---------------UCUUCCUCAUCUUCCUGGGGCAGCUGGUUGCGCAUUGCUUGCAACUCUUCUUCGGAAGGUAGAGUGUCCUUAAGCUCCUCCAUUU ...((((..---------------..)))).........(((((.(((((((((((.......)))))))((((....))))..............)))).)))))... ( -26.20) >DroYak_CAF1 14778 94 - 1 UCUGGAACA---------------AUUUCCCCAUCUUCCUGGGGCAGCUGGUUGCGCAUUGCUUGCAACUCUUCUUCGGAAGGCAGAGUGCCCUUUAGCUCCUCCAUUU ..((((...---------------....(((((......))))).((((((..((((.((((........((((....)))))))).))))...))))))..))))... ( -30.10) >DroPer_CAF1 61666 109 - 1 UCUGGGACAGCAGCUCCCUCGUCAUCAUCAUCAUCUUCGUGAGGCAAUUUAUUACGCAUGGCCCGCAACUCCUCCUCUGAGGGCAGAGUGUCCUUUAGAUCUUCCAUUU (((((((((....((((((((((.((((.(......).)))))))..........((.......))............))))).))..))))))..))).......... ( -24.40) >consensus UCUGGAACA_______________UCUUCCUCAUCUUCCUGAGGCAGCUGGUUGCGCAUUGCUUGCAACUCUUCUUCGGAAGGCAGAGUGCCCUUUAGCUCCUCCAUUU ..((((...........................((((((.((((.((..(((((((.......))))))))).))))))))))..((((........)))).))))... (-16.21 = -17.22 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:58 2006