Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,713,657 – 7,713,748 |
Length | 91 |
Max. P | 0.924077 |
Location | 7,713,657 – 7,713,748 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -22.54 |
Consensus MFE | -21.16 |
Energy contribution | -20.36 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.14 |
Mean z-score | -1.36 |
Structure conservation index | 0.94 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7713657 91 - 27905053 UAAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUA-AGGGAAGU .....(((.(((((....))))).(((((((((....))))))))).((((((((..........))).))))).........-.))).... ( -21.80) >DroSec_CAF1 10632 92 - 1 UGAAACCCAAUAUAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUAAAGGGAAGU .....(((................(((((((((....))))))))).((((((((..........))).)))))...........))).... ( -20.00) >DroSim_CAF1 10639 92 - 1 UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUAAAGGGAAGU .....(((.(((((....))))).(((((((((....))))))))).((((((((..........))).)))))...........))).... ( -21.80) >DroEre_CAF1 10671 92 - 1 UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCUGGCUAACAUUUGACUAAAGGGAAGU .....(((.(((((....))))).(((((((((....))))))))).(((((((....((.....)))))))))...........))).... ( -23.50) >DroYak_CAF1 10710 92 - 1 UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGUUAGCUAGCAUUUGAUUAUAGGGAAGU .....(((.(((((....))))).(((((((((....))))))))).(((((((((.........)))))))))...........))).... ( -25.60) >consensus UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUAAAGGGAAGU .....(((.(((((....))))).(((((((((....)))))))))((((((.((...(((.......)))..)).))))))...))).... (-21.16 = -20.36 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:57 2006