Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,109,513 – 1,109,648 |
Length | 135 |
Max. P | 0.880913 |
Location | 1,109,513 – 1,109,622 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -30.24 |
Consensus MFE | -17.99 |
Energy contribution | -20.92 |
Covariance contribution | 2.93 |
Combinations/Pair | 1.06 |
Mean z-score | -2.35 |
Structure conservation index | 0.59 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1109513 109 + 27905053 AUAUGUUAGCCACUGUCGGAACAUUAUGUUAACAGCACUGUUAAGCGUGUUUCGAACAACAGGUCUAGUGUUGGGACACUAUGUUUCUUCAACAUGUUGCUCGGAGCAU ..((((((((.(((((.(((((((..((((..((((((((....((.((((......)))).)).)))))))).))))..)))))))....))).)).)))...))))) ( -28.80) >DroSec_CAF1 43204 109 + 1 AUAUGUUAGCCACUGUCGGAACAUUAUGUUUACAGCGCUGUUAAGCGUGUUUCAAACAACAGGUCUAGUGUUGAGACACCAUGUUUCUGCAACAUGUUGCUAGGAGCAU ........((..(((..(((((((..(((((.((((((((....((.((((......)))).)).)))))))))))))..))))))).((((....)))))))..)).. ( -32.00) >DroSim_CAF1 43092 109 + 1 AUAUGUUAGCCACUGUCGGAACAUUAUGUUAACAGCGCUGUUAAGCGUGUUUCAAACAACAGGUCAAGUGUUGAGACACCAUGUUUCUGCAACAUGUUGCUAGGAGCAU ...(((((((...(((....)))....)))))))..(((....)))(((((((((...((.......)).))))))))).((((((((((((....)))).)))))))) ( -31.40) >DroEre_CAF1 44171 91 + 1 AUAUGUUAGCCACUGUUUGUACAUUAUGUUAGCAGCGCUGUUAA--------------ACAGACCUAGUGUUGAGACACCAUGUUUCU-CAACAUGUUGCUAGGAG--- ..((((.(((....)))...))))..(.((((((((.(((....--------------.))).....(((((((((.((...)).)))-)))))))))))))).).--- ( -24.20) >DroYak_CAF1 64548 103 + 1 UUAUGAUUGCCACUGUUGGUACAUUAUGUUAGCAACGCUGUUAAUCGUGUUU-----AACAG-UCUAGUGUUGAGAAACUUUGUUUCUGCAACAUGUUGCUAGGAUUAU .(((((((((((....))))).))))))((((((((((((((((......))-----)))))-)...((((((((((((...)))))).))))))))))))))...... ( -34.80) >consensus AUAUGUUAGCCACUGUCGGAACAUUAUGUUAACAGCGCUGUUAAGCGUGUUUC_AACAACAGGUCUAGUGUUGAGACACCAUGUUUCUGCAACAUGUUGCUAGGAGCAU ...(.(((((.(((((.(((((((..((((..((((((((....((.((((......)))).)).)))))))).))))..)))))))....))).)).))))).).... (-17.99 = -20.92 + 2.93)
Location | 1,109,513 – 1,109,622 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -14.00 |
Energy contribution | -15.36 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.56 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1109513 109 - 27905053 AUGCUCCGAGCAACAUGUUGAAGAAACAUAGUGUCCCAACACUAGACCUGUUGUUCGAAACACGCUUAACAGUGCUGUUAACAUAAUGUUCCGACAGUGGCUAACAUAU ..(((.(((((((((((((.....))))((((((....))))))....)))))))))................(((((((((.....)))..)))))))))........ ( -26.70) >DroSec_CAF1 43204 109 - 1 AUGCUCCUAGCAACAUGUUGCAGAAACAUGGUGUCUCAACACUAGACCUGUUGUUUGAAACACGCUUAACAGCGCUGUAAACAUAAUGUUCCGACAGUGGCUAACAUAU ..(((...(((..((((((.....))))))((((.((((((.((....)).)).)))).)))))))....)))(((((.(((.....)))...)))))........... ( -25.70) >DroSim_CAF1 43092 109 - 1 AUGCUCCUAGCAACAUGUUGCAGAAACAUGGUGUCUCAACACUUGACCUGUUGUUUGAAACACGCUUAACAGCGCUGUUAACAUAAUGUUCCGACAGUGGCUAACAUAU ..(((...(((..((((((.....))))))((((.(((((((.......).)).)))).)))))))....)))(((((((((.....)))..))))))........... ( -25.80) >DroEre_CAF1 44171 91 - 1 ---CUCCUAGCAACAUGUUG-AGAAACAUGGUGUCUCAACACUAGGUCUGU--------------UUAACAGCGCUGCUAACAUAAUGUACAAACAGUGGCUAACAUAU ---....((((....(((((-((..((.((((((....)))))).))...)--------------)))))).(((((...((.....)).....)))))))))...... ( -19.70) >DroYak_CAF1 64548 103 - 1 AUAAUCCUAGCAACAUGUUGCAGAAACAAAGUUUCUCAACACUAGA-CUGUU-----AAACACGAUUAACAGCGUUGCUAACAUAAUGUACCAACAGUGGCAAUCAUAA .......(((((((.(((((.((((((...)))))))))))...(.-(((((-----((......))))))))))))))).....(((..(((....)))....))).. ( -26.20) >consensus AUGCUCCUAGCAACAUGUUGCAGAAACAUGGUGUCUCAACACUAGACCUGUUGUU_GAAACACGCUUAACAGCGCUGUUAACAUAAUGUUCCGACAGUGGCUAACAUAU .......((((.(((((((((((.....((((((....))))))...((((((.............))))))..)))).)))))..(((....))))).))))...... (-14.00 = -15.36 + 1.36)
Location | 1,109,552 – 1,109,648 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 78.94 |
Mean single sequence MFE | -25.70 |
Consensus MFE | -15.58 |
Energy contribution | -17.38 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.25 |
Mean z-score | -2.06 |
Structure conservation index | 0.61 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.880913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1109552 96 + 27905053 GUUAAGCGUGUUUCGAACAACAGGUCUAGUGUUGGGACACUAUGUUUCU-UCAACAUGUUGCUCGGAGCAUUCCAACUCGAAGUUGCGUAUACGUAA .....(((((((((((.(((((....((((((....))))))((((...-..))))))))).)))))))....((((.....)))).....)))).. ( -25.10) >DroSec_CAF1 43243 96 + 1 GUUAAGCGUGUUUCAAACAACAGGUCUAGUGUUGAGACACCAUGUUUCU-GCAACAUGUUGCUAGGAGCAUUCCAACUCGAAGUUGCGUAUACGUAA (((..(.(((((((((...((.......)).))))))))))((((((((-((((....)))).))))))))...)))......(((((....))))) ( -25.80) >DroSim_CAF1 43131 96 + 1 GUUAAGCGUGUUUCAAACAACAGGUCAAGUGUUGAGACACCAUGUUUCU-GCAACAUGUUGCUAGGAGCAUUCCAACUCGAAGUUUCGUAUACGUAA ...(((((((((((((...((.......)).))))))))).((((((((-((((....)))).))))))))...........))))........... ( -23.60) >DroYak_CAF1 64587 90 + 1 GUUAAUCGUGUUU-----AACAG-UCUAGUGUUGAGAAACUUUGUUUCU-GCAACAUGUUGCUAGGAUUAUUCCAACUAGAAGUUGCGUAUGCGUAA (((((......))-----)))..-((((((((((((((((...))))))-.)))).........(((....))).))))))..(((((....))))) ( -23.70) >DroAna_CAF1 41386 88 + 1 ---------AGUUUAAACAACAGGUCUACUAACUGGCCAACAUGUUGCUGGCAGCAUGUUGCCAGCAACAUUCUGACUUAACAUUGCGUAUACGUAA ---------.(((....((...((((........))))...(((((((((((((....)))))))))))))..))....))).(((((....))))) ( -30.30) >consensus GUUAAGCGUGUUUCAAACAACAGGUCUAGUGUUGAGACACCAUGUUUCU_GCAACAUGUUGCUAGGAGCAUUCCAACUCGAAGUUGCGUAUACGUAA .......(((((((((...((.......)).))))))))).((((((((.((((....)))).))))))))............(((((....))))) (-15.58 = -17.38 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:32 2006