| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,707,825 – 7,707,945 |
| Length | 120 |
| Max. P | 0.859198 |
| Location | 7,707,825 – 7,707,945 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -44.05 |
| Consensus MFE | -28.19 |
| Energy contribution | -30.12 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7707825 120 - 27905053 UGCACUCCAUCUUCGGGAUAGAUGGCAAUCCGUUGGGCUGGGGCCUGCGGACCACGACGCUUGAAAACAAUCCGGUGCAAUUCCAAACGCUGCACCAGUUCUUCGGCGUCUGUGGUCCCC .((...((((((.......)))))).........((((....))))))(((((((((((((.((((((.....((((((...........)))))).))).))))))))).))))))).. ( -45.80) >DroGri_CAF1 15773 120 - 1 UGCACUCCAUAUUCGGCAUUAAUGGCAACCCCUUGGGAUGGGGACUGCGGAUUACGACCAUGGAGAAUGCAUCGCAUUCUUUCAACAGACUGCAGCAUUUCUUUGGUGUCAACGGCAUUU ....((((((..(((..(((....(((.((((.......))))..))).)))..)))..))))))(((((...(((.(((......))).))).(((((.....))))).....))))). ( -33.00) >DroSec_CAF1 4770 120 - 1 UGCACUCCAUAUUCGGGAUCGAUGGCAAUCCAUUGGGCUGGGGCCUGCGGACCACGACGCUUGAAAACAAUCCGCUGCAAUUCCAAACGCUUAACCAGUUCUUUGGCGUCUGUGGUCCCU .(((..((....((((..(((((((....))))))).))))))..)))(((((((((((((.(((........((.............))........)))...)))))).))))))).. ( -38.21) >DroEre_CAF1 4852 120 - 1 UGCACUCCAUCUUCGGGAUCAGUAGCAAUCCUUUGGGCUGGGGCCUGCGGACCACGACGCUGGAGAACAAUCCGCUGCACUUCCAAACGCUGCAGCAGUUCUUCGGCGUCUGUGGGCCCU .(((((((((((..(((((........)))))..))).)))))..)))((.(((((((((((((((((.....(((((((........).)))))).))))))))))))).))))..)). ( -53.70) >DroWil_CAF1 57553 120 - 1 UUCACUCCAUAUUUGGCAUCAAUGGCAAUCCGAUAGGCUGGGGAUUGAGGACCACGACACAGGAGAACUCACCACAUUACUUCCACAUUCUGCAGCAGUUCUUUGGAGUGCGUGGUCCUU ....(((((...(((.((....)).))).((....)).)))))...((((((((((.(((.((.(....).))........((((....(((...))).....))))))))))))))))) ( -36.20) >DroYak_CAF1 4832 120 - 1 UGCACUCCAUCUUCGGGAUCAGUGGCAAUCCCUUGGGCUGGGGCCUGCGGACCACGACGCUGGAGAACAACCCACUGCACUUCCAGACGCUGCAGCAGUUCUUCGGCGUCUGUGGUCCUU .(((((((((((..(((((........)))))..))).)))))..)))((((((((((((((((((((......(((......)))..((....)).))))))))))))).))))))).. ( -57.40) >consensus UGCACUCCAUAUUCGGGAUCAAUGGCAAUCCCUUGGGCUGGGGCCUGCGGACCACGACGCUGGAGAACAAUCCGCUGCACUUCCAAACGCUGCAGCAGUUCUUCGGCGUCUGUGGUCCCU .((((((((..((((((((........))))..)))).)))))..)))((((((((((((((((((((.............................))))))))))))).))))))).. (-28.19 = -30.12 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:56 2006