Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,702,871 – 7,702,966 |
Length | 95 |
Max. P | 0.764699 |
Location | 7,702,871 – 7,702,966 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -44.50 |
Consensus MFE | -44.50 |
Energy contribution | -44.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 1.00 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7702871 95 + 27905053 UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC .(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... ( -44.50) >DroSec_CAF1 52560 95 + 1 UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC .(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... ( -44.50) >DroSim_CAF1 52747 95 + 1 UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC .(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... ( -44.50) >consensus UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC .(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... (-44.50 = -44.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:52 2006