Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,699,065 – 7,699,185 |
Length | 120 |
Max. P | 0.591285 |
Location | 7,699,065 – 7,699,185 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -22.00 |
Energy contribution | -21.40 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.17 |
Mean z-score | -1.33 |
Structure conservation index | 0.83 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7699065 120 - 27905053 GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCUCGAAUUCAAUACUGGGAAUGUACAUUUCCAAUAUUUGGACAGUGUGAAAGCAAUACGUUUUGUUACAAACAUUUUAA (((..(((((.(((((((((((((..............)))))....((((.((((((.......)...((((.....))))))))))))).)).)))))))))))....)))....... ( -24.64) >DroSec_CAF1 48922 120 - 1 GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCAAAUUCAAUACUGGAAAUUUACAUUUUCAAUAUUUGGACAGUGUGAAAGCAAUACGGUUUGUUACAAACGUUUUAA (((..((((((.(((((((.((((..............))))(((..(((((((.(((((((....))))))).)).)))))...)))....)).)))))))))))....)))....... ( -24.94) >DroSim_CAF1 48969 120 - 1 GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCGAAUUCAAUACUGGAAAUGUACAUUUUCAAUAUUUGGGCAGUGUGAAAGCAAUAUGGUUUGUUACAAACGUUUUAA ((((((((......))))))))....(((((......((.((((...(..((((.(((((((....))))))).))))..)...)))).))(((((......)))))......))))).. ( -24.90) >DroEre_CAF1 49380 120 - 1 AUUGCGCAAACAUGUGUGCAGCCGCAAAAAUAAUUAAUUGGCGCGAAUUCAAUACUGGAAAUGUAAAUUUUCCAUAUUUGGACAGUGUGAAAGCAAUACGGUGUGUAACAAACGUUUUAA .(((((((....(((((((.((((..............)))).....((((.(((((.((((....))))((((....))))))))))))).)).))))).)))))))............ ( -26.94) >DroYak_CAF1 50558 120 - 1 GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCGAAUUCAAUAUUGGAAAUAUACAUUUUCAAUAUUUGGACAGUGUGAAAGCAAUACGGUUUGUAGCUAACGUUUUGA (((((((((((.(((((((.((((..............))))(((..(((((((((((((((....)))))))))).)))))...)))....)).))))))))))).)).)))....... ( -30.74) >consensus GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCGAAUUCAAUACUGGAAAUGUACAUUUUCAAUAUUUGGACAGUGUGAAAGCAAUACGGUUUGUUACAAACGUUUUAA (((((....((((.(((.((((((..............))))........((((.(((((((....))))))).)))))).)))))))....)))))....................... (-22.00 = -21.40 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:45 2006