Locus 2871

Sequence ID 3R_DroMel_CAF1
Location 7,694,069 – 7,694,177
Length 108
Max. P 0.521436
window4636

overview

Window 6

Location 7,694,069 – 7,694,177
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -17.94
Consensus MFE -14.43
Energy contribution -15.47
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.35
Structure conservation index 0.80
SVM decision value -0.02
SVM RNA-class probability 0.521436
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7694069 108 - 27905053
CACCAGUAAACUAAACUAAUUUGCACAGUUUUGCUUUUGCCAAACUUUGUCUCUCAAUUUGGGCAA--AAAUAGAUCAA-AAUUGCCAACUUUCAGAUACACGAACUUUUU
.....(((..............(((.(((((.((....)).))))).))).(((.((....(((((--...........-..)))))....)).))))))........... ( -14.82)
>DroSec_CAF1 44001 109 - 1
CACCAGUAAACUAAACUAAUUUGCACAGUUUUGCUUUUGCCAAACUUUGUCUCUCAAUGUUGGCAAA-AAAUAGAUAAA-AAUUGCCAACUUUCAGAUACACGAACUUUUU
.....(((..............(((.(((((.((....)).))))).))).(((.((.((((((((.-...........-..)))))))).)).))))))........... ( -20.04)
>DroSim_CAF1 44008 110 - 1
CACCAGUAAACUAAACUAAUUUGCACAGUUUUGCUUUUGCCAAACUUUGUCUCUCAAUGUUGGCAAA-AAAUAGAUAAAAAAUUGCCAACUUUCAGAUACACGAACUUUUU
.....(((..............(((.(((((.((....)).))))).))).(((.((.((((((((.-..............)))))))).)).))))))........... ( -19.96)
>DroEre_CAF1 44463 109 - 1
UACCAGUAAACUAAACUAAUUUGCACAGUUUUGCC-UUGCCAAACUUUGUCUCUCAGUGCUGGCAAAAAAAUAGAUAAC-AUUUGCCAACUUUUAGAUACUCGAACUUUCU
..(.((((..(((((.......(((((((((.((.-..)).))))).((.....))))))(((((((............-.)))))))...))))).)))).)........ ( -17.62)
>DroYak_CAF1 45440 109 - 1
UGGCAGUAAACUAAACUAAUUUGCACAGUUUUGCUUUUGCCAAACUUUGUCUCUCAAUGUGGGCAAA-AAAUAGAUAAG-AACUGACAACUUUUAGAUACACGAACUUUUU
..((((..............)))).(((((((.((((((((..((.(((.....))).)).))))))-....))...))-))))).......................... ( -17.24)
>consensus
CACCAGUAAACUAAACUAAUUUGCACAGUUUUGCUUUUGCCAAACUUUGUCUCUCAAUGUUGGCAAA_AAAUAGAUAAA_AAUUGCCAACUUUCAGAUACACGAACUUUUU
.....(((..............(((.(((((.((....)).))))).))).(((.((.((((((((................)))))))).)).))))))........... (-14.43 = -15.47 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:43 2006