Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,692,428 – 7,692,531 |
Length | 103 |
Max. P | 0.874032 |
Location | 7,692,428 – 7,692,531 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -20.42 |
Energy contribution | -20.05 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.05 |
Mean z-score | -2.24 |
Structure conservation index | 0.80 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7692428 103 + 27905053 AGGGCAAUAAAACAUAACAAGUUGUCACAAGUGUGACACUGAUUGAAAUUAUAAACUGUCACCAGCAGGGACAUCCCUCGGAUGC--GUA----GAUACACCCAUCCAC-- ((((..........(((..(((.(((((....))))))))..)))...........((((.((....)))))).)))).(((((.--((.----.....)).)))))..-- ( -26.00) >DroSec_CAF1 42362 103 + 1 AGGGCAAUAAAACAUAACAAGUUGUCACAAGUGUGACACUGAUUGAAAUUAUAAACUAUCACCAGCAGGGACAUCCCUCGGAUGC--GUA----GAUACACCCACACAC-- .(((..........(((..(((.(((((....))))))))..)))..........((((((((.(.((((....))))))).)).--)))----).....)))......-- ( -23.80) >DroSim_CAF1 42345 103 + 1 AGGGCAAUAAAACAUAACAAGUUGUCACAAGUGUGACACUGAUUGAAAUUAUAAACUGUCACCAGCAGGGACAUCCCUCGGAUGC--GUA----GAUACACCCACACAC-- .(((..........(((..(((.(((((....))))))))..)))...........((((((((.(((((....)))).)..)).--)).----))))..)))......-- ( -22.40) >DroAna_CAF1 45041 111 + 1 AGUGCAAUAAAACAUAACAAGUUGUCACAAGAGUGACACUGAUUGAAAUUAUAAACUGUCACCAGCAGGGACAUCCCUCGGAUCCUCGUAUCUGGAGACACGCACACAUCC .((((.........(((..(((.(((((....))))))))..)))...........((((.((((.((((....))))(((....)))...)))).)))).))))...... ( -29.80) >consensus AGGGCAAUAAAACAUAACAAGUUGUCACAAGUGUGACACUGAUUGAAAUUAUAAACUGUCACCAGCAGGGACAUCCCUCGGAUGC__GUA____GAUACACCCACACAC__ .(((..........(((..(((.(((((....))))))))..)))................((.(.((((....)))))))...................)))........ (-20.42 = -20.05 + -0.37)
Location | 7,692,428 – 7,692,531 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -23.54 |
Energy contribution | -23.60 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.74 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641371 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7692428 103 - 27905053 --GUGGAUGGGUGUAUC----UAC--GCAUCCGAGGGAUGUCCCUGCUGGUGACAGUUUAUAAUUUCAAUCAGUGUCACACUUGUGACAACUUGUUAUGUUUUAUUGCCCU --.((((((.(((....----)))--.))))))((((....))))((((....))))..........(((.((((((((....))))).))).)))............... ( -31.30) >DroSec_CAF1 42362 103 - 1 --GUGUGUGGGUGUAUC----UAC--GCAUCCGAGGGAUGUCCCUGCUGGUGAUAGUUUAUAAUUUCAAUCAGUGUCACACUUGUGACAACUUGUUAUGUUUUAUUGCCCU --(((((((((....))----)))--))))...((((....))))...((..((((..((((((.........((((((....))))))....))))))..))))..)).. ( -32.72) >DroSim_CAF1 42345 103 - 1 --GUGUGUGGGUGUAUC----UAC--GCAUCCGAGGGAUGUCCCUGCUGGUGACAGUUUAUAAUUUCAAUCAGUGUCACACUUGUGACAACUUGUUAUGUUUUAUUGCCCU --(((((((((....))----)))--))))...((((....))))((((....))))..........(((.((((((((....))))).))).)))............... ( -29.40) >DroAna_CAF1 45041 111 - 1 GGAUGUGUGCGUGUCUCCAGAUACGAGGAUCCGAGGGAUGUCCCUGCUGGUGACAGUUUAUAAUUUCAAUCAGUGUCACUCUUGUGACAACUUGUUAUGUUUUAUUGCACU ((((.(...((((((....)))))).).)))).((((....))))((((....))))..........(((.((((((((....))))).))).))).(((......))).. ( -34.60) >consensus __GUGUGUGGGUGUAUC____UAC__GCAUCCGAGGGAUGUCCCUGCUGGUGACAGUUUAUAAUUUCAAUCAGUGUCACACUUGUGACAACUUGUUAUGUUUUAUUGCCCU ........((((.....................((((....))))((((....))))..........(((.((((((((....))))).))).)))..........)))). (-23.54 = -23.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:42 2006