Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,108,922 – 1,109,015 |
Length | 93 |
Max. P | 0.523776 |
Location | 1,108,922 – 1,109,015 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -16.43 |
Consensus MFE | -9.47 |
Energy contribution | -10.32 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.58 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1108922 93 - 27905053 GAAAAAACAU-CUGCGGAGAGCACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACG-----AAGAAAGGCCAA .........(-((((.....)).(((((....(((((((........((((((.....))))))...)))))))...)))))-----.)))........ ( -18.40) >DroSec_CAF1 42500 93 - 1 GAAAAAACAU-CUGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAAAUAGGAACAAAGUGUUUACGUGUAACG-----AAGAAAGGCCAA ..........-....((......(((((....(((((((........((((((.....))))))...)))))))...)))))-----........)).. ( -16.64) >DroSim_CAF1 42531 93 - 1 GAAAAAACAU-CUGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACG-----AAGAAAGGCCAA ..........-....((......(((((....(((((((........((((((.....))))))...)))))))...)))))-----........)).. ( -16.64) >DroEre_CAF1 43604 92 - 1 -AAAAAACAU-CCGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACA-----AAGAUAGGCCAA -.........-.((((..(((((((((........))).........((((((.....))))))..)))))).)))).....-----............ ( -17.50) >DroYak_CAF1 63961 92 - 1 -AUAAAACAU-CUGCAGAGAACACGAUGAAAAGUAAACAAAUUUGAAUGUUCCAACUAGGAACAAAGUGUUUACGUGUAACA-----AAGAAAGGCCAA -........(-((.......((((..(....)(((((((........((((((.....))))))...)))))))))))....-----.)))........ ( -15.80) >DroAna_CAF1 41071 84 - 1 -AAAAAACAAUUCAAGCUAAUCGCAAUCGGAUGUAAACAAGUUGG--------------GUGGCAAGUGUUUACGUGUUACGGGAAUAAAAACGGGGAA -........((((..((.....))..(((.(((((((((..(((.--------------....))).)))))))))....)))))))............ ( -13.60) >consensus _AAAAAACAU_CUGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACG_____AAGAAAGGCCAA ....................((((..(....)(((((((........((((((.....))))))...)))))))))))..................... ( -9.47 = -10.32 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:30 2006