Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,689,638 – 7,689,731 |
Length | 93 |
Max. P | 0.908748 |
Location | 7,689,638 – 7,689,731 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 91.95 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -18.84 |
Energy contribution | -18.96 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.63 |
Structure conservation index | 0.85 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7689638 93 + 27905053 ACUAAAAAUAUCUGAGGUAGUCCAACCGA--UGUUCAUGUUCAACCGAACUGAAUAAUGCAGAAGUGUACGUUGGACAUGUGCUUAUUCCUGGGA ..........(((.(((..(((((((...--((((((.((((....)))))))))).((((....)))).)))))))(((....))).))).))) ( -23.80) >DroSec_CAF1 39550 95 + 1 UCUAAAAAUAUCUGAGGUAGUCCAACCGAUAUGUUCAUGUUCAACCGAACUGAAUAAUACAGUAGUGUACGUUGGACAUGUGCUUAUUCCUGAGA ..........(((.(((..(((((((.....((((((.((((....))))))))))((((....))))..)))))))(((....))).))).))) ( -24.30) >DroSim_CAF1 39531 95 + 1 ACUAAAAAUAUCUGAGGUAGUCCAACCGAUAUGUUCAUGUUCAACCGAACUGAAUAAUACAGUAGUGUACGUUGGACAUGUGCUUAUUCCUGAGA ..........(((.(((..(((((((.....((((((.((((....))))))))))((((....))))..)))))))(((....))).))).))) ( -24.30) >DroEre_CAF1 40118 93 + 1 ACUAAAAAUAUCUGAGGUAGUCCAACCGA--UGUUCAUGUUCAAUUGAAAUGAAUAAUAAAGAAGUGUACAUUGGACAUGUGCUUAUUUCUGAGA ..........((.(((((((..((.((((--(((.((((((((.......))))).........))).)))))))...))..).)))))).)).. ( -16.90) >DroYak_CAF1 40059 93 + 1 ACUAAAAAUAUCUGAGGCAGUCCAGCCGA--UGUUCGUGUUCAAUUGAAAUGAAUAAUACAGAAGUGUACAUUGGACAUGUGCUUAUUUCUGAGA ...............(((......)))..--(((((((.(((....))))))))))...(((((((((((((.....))))))..)))))))... ( -21.60) >consensus ACUAAAAAUAUCUGAGGUAGUCCAACCGA__UGUUCAUGUUCAACCGAACUGAAUAAUACAGAAGUGUACGUUGGACAUGUGCUUAUUCCUGAGA ..........(((.(((..(((((((.....((((((.((((....))))))))))((((....))))..)))))))(((....))).))).))) (-18.84 = -18.96 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:38 2006