Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,688,026 – 7,688,127 |
Length | 101 |
Max. P | 0.736943 |
Location | 7,688,026 – 7,688,127 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.68 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -17.89 |
Energy contribution | -17.87 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.18 |
Mean z-score | -2.96 |
Structure conservation index | 0.71 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7688026 101 - 27905053 -AAAAAUUGGGAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGGGAAAAUCGGGA--A -.............((((((((((.(((((((.....))))))).......(((((....))))).......((((((.......)))))).)))))))))--) ( -26.50) >DroSec_CAF1 37918 104 - 1 AAAAAAUUGGAAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUAACUUUUGAGAAUGGCGAGGGAAAAUCGGGAAAA .............(((((((((((.(((((((.....))))))).......(((((....))))).......((((((.......)))))).))))))))))). ( -28.30) >DroSim_CAF1 37895 102 - 1 AAAAAAUUGGAAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGGGAAAAUCGGGA--A ..............((((((((((.(((((((.....))))))).......(((((....))))).......((((((.......)))))).)))))))))--) ( -26.50) >DroEre_CAF1 38486 102 - 1 AAAAAAUUGCGAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUAAGAAACGCGAGGGAAAAAUGGGA--A ......(((((...(((((..(((((((((((.....)))).)))))))..(((((....))))).............)))))))))).............--. ( -24.30) >DroYak_CAF1 38383 97 - 1 GAAGG-----AAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGCGAAAAAUGGGA--A .....-----.....((((.((((.(((((...((...(.((((((((...(((((....)))))....))).))))).)....))..))))))))).)))--) ( -22.60) >DroAna_CAF1 40568 95 - 1 ----AAUUGAAAAUCUGCUGAUUUAUUUGUGCAGCCAGCGCGAAAUGAAAAAUUGCGUAAGCGGAGAAAUUACUUUCAAG-----CUGAGGAGCACCGUGCACA ----......(((((....)))))...((((((((..((((((.........))))))..))((.((((....))))..(-----((....))).)).)))))) ( -23.60) >consensus AAAAAAUUGGAAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGGGAAAAUCGGGA__A .............((((((..(((((((((((.....)))).)))))))..(((((....))))).......................)))))).......... (-17.89 = -17.87 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:37 2006