Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,687,109 – 7,687,222 |
Length | 113 |
Max. P | 0.540930 |
Location | 7,687,109 – 7,687,222 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -40.13 |
Consensus MFE | -28.04 |
Energy contribution | -28.98 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.17 |
Mean z-score | -1.72 |
Structure conservation index | 0.70 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7687109 113 - 27905053 CUGUUGUUAUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----AGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUUGU- ...(((....(((((.......(..(((((.(..((((((((((((((((....)).)))).........--)----)))))))))..)....)))))..)...)))))..))).....- ( -35.90) >DroSec_CAF1 37002 113 - 1 CUGUUGUUCUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----GGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUUGU- (((..((((((((((..((((.(((((.((((..((((((((((........)))))))))).......)--)----)))))))....)))).)))))......)))))..))).....- ( -41.60) >DroSim_CAF1 37003 113 - 1 CUGUUGUUCUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----GGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUUGU- (((..((((((((((..((((.(((((.((((..((((((((((........)))))))))).......)--)----)))))))....)))).)))))......)))))..))).....- ( -41.60) >DroEre_CAF1 37553 113 - 1 CUGUUGUUUUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----GGGCCAAGAAGGGUUCGGCGCUGGAAAGGAACUUUAGUUCGU- (((..((((..(((((..(((.(((((.((((..((((((((((........)))))))))).......)--)----)))))))((.....)))))..)))))..))))..))).....- ( -42.20) >DroYak_CAF1 37427 116 - 1 GUGUUGCUUUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGCCCUGUCUGCCCUCGGGCCAGAACGAAAGUAUUU----GGGCCAAGAAGGGUUCGGGACGCGAAAGGAACUUUAGUUCGUU .....(((..(((((..((((...))))......((((((((((...(((((.((.(((((((....)).)))----)).))....))))).))))..)))))))))))...)))..... ( -41.10) >DroAna_CAF1 39607 102 - 1 CCGUUGUUUUGG-CCAUGGCCAUUGGCUCCAUUAUUUUGGUCU-UCUGCCC-CGGGCCAGGACGAUGAGU--CGGCGGGGCCUGAAUGGGAGCGGAGC-------------AAGUUCGCC .(((((((((((-((..(((....((..(((......))).))-...))).-..)))))))))))))...--.(((((.(((((........))).))-------------....))))) ( -38.40) >consensus CUGUUGUUUUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA__U____GGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUCGU_ .....((((((..((.(((((..((....))(..((((((((((........))))))))))..).............))))).....))..)))))).......((((....))))... (-28.04 = -28.98 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:36 2006