Locus 2864

Sequence ID 3R_DroMel_CAF1
Location 7,685,790 – 7,685,898
Length 108
Max. P 0.608952
window4628

overview

Window 8

Location 7,685,790 – 7,685,898
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.27
Mean single sequence MFE -32.52
Consensus MFE -22.42
Energy contribution -22.90
Covariance contribution 0.48
Combinations/Pair 1.30
Mean z-score -1.65
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.608952
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7685790 108 + 27905053
------CCUUUUGCCAUUUUUGUCUGGGAGGGAACCGAGUGCAGUGGCACUUAAUAAGCAAAAUGUUUGCCCUGCAUGGGCAACAGAA------ACUCGUUUAUGCAAUGCUCCUAACAU
------..............(((.((((((.(....((((((....)))))).((((((....((((.((((.....))))))))(..------...)))))))....).))))))))). ( -30.20)
>DroSec_CAF1 35647 114 + 1
UUUUUUUUUUUUGCCAUUUCUGUCUGGGAGGGAACAAAGUGCAGAGGCACUUAAUAAGCAAAGUGUUUGCCCUGCAUGGGCAACAGAA------ACUCGUUUAUGCAACGCUCCUAACAU
....................(((.((((((.(....((((((....)))))).((((((..(((..((((((.....)))))).....------))).))))))....).))))))))). ( -31.70)
>DroSim_CAF1 35651 114 + 1
UUUUGUUUUUUUGCCAUUUCUGUCUGGGAGGGAACAAAGUGCAGAGGCACUUAAUAAGCAAAGUGUUUGCCCUGCAUGGGCAACAGAA------ACUCGUUUAUGCAACGCUCCUAACAU
....................(((.((((((.(....((((((....)))))).((((((..(((..((((((.....)))))).....------))).))))))....).))))))))). ( -31.70)
>DroEre_CAF1 36216 106 + 1
--------UUUUGCCAUUUCUGUCCGGGAGGGAACAAAGUGCAGAGGCACUUAAUAAGCAAAGUGUUUGCCCUGCAUGGGCAACAGAA------ACUCGUUUAUGCAACGCUCCUAACAU
--------............(((..(((((.(....((((((....)))))).((((((..(((..((((((.....)))))).....------))).))))))....).))))).))). ( -30.40)
>DroYak_CAF1 36045 114 + 1
UAUUUUUUUUUUGCCAUUUCUGUCUGGGAGGUAACAAAGUGCAGAGGCACUUAAUAAGCAAAGUGUUUGCCCUGCAUGGGCAAGAGAA------ACUCGUUUAUGCAACACGCCUAACAU
....(((((((((((((((((.....))))))......((((((.(((((((........))))....))))))))).))))))))))------)...(((...((.....))..))).. ( -30.70)
>DroAna_CAF1 38174 112 + 1
UAU-----UUUUUGCACUUCUGUCUGGGAGUGAACGAUAUGCGGAGGCACUUAAUAAGUAAAGUGUUUGCCCUCC---GGCAGCAGGGCAGCUCCCUCGUACGUGUAGCUCCCUUGGAAA
...-----.........(((((...((((((..(((.((((.((((((((((........))))))(((((((.(---....).)))))))))))..)))))))...)))))).))))). ( -40.40)
>consensus
U_U___UUUUUUGCCAUUUCUGUCUGGGAGGGAACAAAGUGCAGAGGCACUUAAUAAGCAAAGUGUUUGCCCUGCAUGGGCAACAGAA______ACUCGUUUAUGCAACGCUCCUAACAU
....................(((.((((((.(....((((((....)))))).((((((.......((((((.....))))))..((.........))))))))....).))))))))). (-22.42 = -22.90 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:35 2006