Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,685,109 – 7,685,362 |
Length | 253 |
Max. P | 0.999896 |
Location | 7,685,109 – 7,685,228 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.36 |
Mean single sequence MFE | -36.36 |
Consensus MFE | -23.32 |
Energy contribution | -25.80 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.19 |
Mean z-score | -2.42 |
Structure conservation index | 0.64 |
SVM decision value | 2.36 |
SVM RNA-class probability | 0.992882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7685109 119 + 27905053 AGACCGAAACACAAUGGAAAUGUUUGGUUUUGUGGGGCUUCGAGGAUUUCGCGGGCAGAUGCCAUGGUGGCUAUGGGAUGUCUACGGAGUUCUAUAAGCCCCGCUUUAUAACUCAUAUG ((((((((.....((....)).)))))))).(((((((((..(((((((((..((((....((((((...))))))..))))..)))))))))..)))))))))............... ( -45.90) >DroSec_CAF1 34992 100 + 1 AGACCGAAACACAAUGGAAAUGUUUGGUUUUGUGGGGCUUCGAGGAUUUCGCGGGCAGA-------------------UGUCUACGGAGUUCUAUAAGCUGCGCUUUAUAACUCAUAUG ((((((((.....((....)).)))))))).(((.(((((..(((((((((..(((...-------------------.)))..)))))))))..))))).)))............... ( -31.90) >DroSim_CAF1 34993 100 + 1 AGACCGAAACACAAUGGAAAUGUUUGGUUUUGUGGGGCUUCGAGGAUUUCGCGGGCAGA-------------------UGUCUACGGAGUUCUAUAAGCUCCGCUUUAUAACUCAUAUG ((((((((.....((....)).)))))))).(((((((((..(((((((((..(((...-------------------.)))..)))))))))..)))))))))............... ( -35.70) >DroEre_CAF1 35547 116 + 1 AGACCGAAACACAAUGGAAAUGUUUGGUUUUGUGGGGCUUCGAGGAUUUCGCGGGCGAAUGCCAUG---GCUAUGGGGUGUCUACGGAGUUCUAUAAGCUCCGCUUUAUAACUCAUAUG ((((((((.....((....)).)))))))).(((((((((..(((((((((..(((..((.((((.---...)))).)))))..)))))))))..)))))))))............... ( -39.70) >DroAna_CAF1 37572 102 + 1 A--UGAAAACACAAUGCGAAUGCGGGAGUGGGAGC-GGGUGGUGGACUGAGGGGACC------------AGCAUGG--AGUCUUCAGUGUUCUAUAAGCCGAGCUUUAUAACUCAUAUG .--...........(((....))).((((.(((((-.(((.((((((((((((..((------------.....))--..)))))))...)))))..)))..)))))...))))..... ( -28.60) >consensus AGACCGAAACACAAUGGAAAUGUUUGGUUUUGUGGGGCUUCGAGGAUUUCGCGGGCAGA_____________AUGG__UGUCUACGGAGUUCUAUAAGCUCCGCUUUAUAACUCAUAUG (((((.(((((.........)))))))))).(((((((((..(((((((((..((((.....................))))..)))))))))..)))))))))............... (-23.32 = -25.80 + 2.48)
Location | 7,685,228 – 7,685,347 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.31 |
Mean single sequence MFE | -30.28 |
Consensus MFE | -26.80 |
Energy contribution | -26.88 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.89 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7685228 119 + 27905053 GGCUUGUUAUGUGCCAUGUUAUCGUCUUGUCGCUGCACGCAUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUUCCCACAGGGUAUUAUGA .((.(((...(((.((...........)).))).))).)).....((.((((((((((((((((.-.((((.((((......))))...)))).)))))).))......)))))))).)) ( -29.00) >DroSec_CAF1 35092 119 + 1 GGCUUGUUAUGUGCCAUGUUAUCGUCUUGUCGCUCCACGCAUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAAAAUAAUGAGCUUCCGACAGGGUAUUAUGA (((.........)))................((.....)).....((.((((((((..(((((((-((((..((((......))))..))))).))))))(....)...)))))))).)) ( -30.80) >DroSim_CAF1 35093 120 + 1 GGCUUGUUAUGUGCCAUGUUAUCGUCUUGUCGCUGCACGCAUUUGUCUUGAUACCCAACUCGUUUUUUUAUUGCCCUUUUUUGGGCUUUAAAAUAAUGAGCUUCCGACAGGGUAUUAUGA .((.(((...(((.((...........)).))).))).)).....((.((((((((..((((((.(((((..((((......))))..))))).))))))(....)...)))))))).)) ( -33.70) >DroEre_CAF1 35663 119 + 1 GGCUUGUUAUGUGCCAUGUUAUCGUCUUGUCGCUGUACGCAUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUCCCGACAGGGUAUUGUGA (((.........)))..............((((.((((.(...(((((((.....)))((((((.-.((((.((((......))))...)))).)))))).....))))).)))).)))) ( -28.70) >DroYak_CAF1 35491 119 + 1 GGCUUGUUAUGUGCCAUGUUAUCGUGUUGUCGCUGUACGCAUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUUCCGACAGGGUAUGAUGG (((.........)))....((((((((((((((.....))..................((((((.-.((((.((((......))))...)))).)))))).....)))))..))))))). ( -29.20) >consensus GGCUUGUUAUGUGCCAUGUUAUCGUCUUGUCGCUGCACGCAUUUGUCUUGAUACCCAACUCGUUU_UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUUCCGACAGGGUAUUAUGA (((.........)))................((.....)).....((.((((((((..((((((....((..((((......))))..))....))))))(....)...)))))))).)) (-26.80 = -26.88 + 0.08)
Location | 7,685,268 – 7,685,362 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 95.76 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -32.24 |
Energy contribution | -32.08 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -5.28 |
Structure conservation index | 0.94 |
SVM decision value | 3.68 |
SVM RNA-class probability | 0.999520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7685268 94 + 27905053 AUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUUCCCACAGGGUAUUAUGAAGGGUAUACAGGAUA ...(((((((((((((..((((((.-.((((.((((......))))...)))).))))))...(((...))).........)))))).))))))) ( -32.30) >DroSec_CAF1 35132 94 + 1 AUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAAAAUAAUGAGCUUCCGACAGGGUAUUAUGAAGGGUAUGCAGGAUA ...(((((((((((((..(((((((-((((..((((......))))..))))).))))))..(((....))).........)))))).))))))) ( -34.80) >DroSim_CAF1 35133 95 + 1 AUUUGUCUUGAUACCCAACUCGUUUUUUUAUUGCCCUUUUUUGGGCUUUAAAAUAAUGAGCUUCCGACAGGGUAUUAUGAAGGGUAUGCAGGAUA ...(((((((((((((..((((((.(((((..((((......))))..))))).))))))..(((....))).........)))))).))))))) ( -36.20) >DroEre_CAF1 35703 94 + 1 AUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUCCCGACAGGGUAUUGUGAAGGGUAUGCAGGAUU ....((((((((((((..((((((.-.((((.((((......))))...)))).))))))..(((....))).........)))))).)))))). ( -33.70) >DroYak_CAF1 35531 94 + 1 AUUUGUCUUGAUACCCAACUCGUUU-UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUUCCGACAGGGUAUGAUGGAGGGUAUGCAGGAUU ....((((((((((((..((((((.-.((((.((((......))))...)))).))))))..((((.((.....)).)))))))))).)))))). ( -33.90) >consensus AUUUGUCUUGAUACCCAACUCGUUU_UUUAUUGCCCUUUUUUGGGCUUUAUAAUAAUGAGCUUCCGACAGGGUAUUAUGAAGGGUAUGCAGGAUA ....((((((((((((..((((((....((..((((......))))..))....))))))..(((....))).........)))))).)))))). (-32.24 = -32.08 + -0.16)
Location | 7,685,268 – 7,685,362 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.76 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -21.61 |
Energy contribution | -21.61 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.83 |
Structure conservation index | 0.90 |
SVM decision value | 4.43 |
SVM RNA-class probability | 0.999896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7685268 94 - 27905053 UAUCCUGUAUACCCUUCAUAAUACCCUGUGGGAAGCUCAUUAUUAUAAAGCCCAAAAAAGGGCAAUAAA-AAACGAGUUGGGUAUCAAGACAAAU ..((.((.((((((.........(((...))).(((((....((((...((((......)))).)))).-....))))))))))))).))..... ( -23.10) >DroSec_CAF1 35132 94 - 1 UAUCCUGCAUACCCUUCAUAAUACCCUGUCGGAAGCUCAUUAUUUUAAAGCCCAAAAAAGGGCAAUAAA-AAACGAGUUGGGUAUCAAGACAAAU ..((.((.((((((..........((....)).(((((.((.(((((..((((......))))..))))-))).))))))))))))).))..... ( -23.70) >DroSim_CAF1 35133 95 - 1 UAUCCUGCAUACCCUUCAUAAUACCCUGUCGGAAGCUCAUUAUUUUAAAGCCCAAAAAAGGGCAAUAAAAAAACGAGUUGGGUAUCAAGACAAAU ..((.((.((((((..........((....)).(((((.((.(((((..((((......))))..))))).)).))))))))))))).))..... ( -24.90) >DroEre_CAF1 35703 94 - 1 AAUCCUGCAUACCCUUCACAAUACCCUGUCGGGAGCUCAUUAUUAUAAAGCCCAAAAAAGGGCAAUAAA-AAACGAGUUGGGUAUCAAGACAAAU ..((.((.((((((.........(((....)))(((((....((((...((((......)))).)))).-....))))))))))))).))..... ( -24.70) >DroYak_CAF1 35531 94 - 1 AAUCCUGCAUACCCUCCAUCAUACCCUGUCGGAAGCUCAUUAUUAUAAAGCCCAAAAAAGGGCAAUAAA-AAACGAGUUGGGUAUCAAGACAAAU ..((.((.(((((((((..((.....))..)))(((((....((((...((((......)))).)))).-....))))))))))))).))..... ( -23.50) >consensus UAUCCUGCAUACCCUUCAUAAUACCCUGUCGGAAGCUCAUUAUUAUAAAGCCCAAAAAAGGGCAAUAAA_AAACGAGUUGGGUAUCAAGACAAAU ..((.((.((((((.........((.....)).(((((...........((((......))))...........))))))))))))).))..... (-21.61 = -21.61 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:32 2006