Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,108,640 – 1,108,733 |
Length | 93 |
Max. P | 0.883018 |
Location | 1,108,640 – 1,108,733 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.13 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -17.96 |
Energy contribution | -18.88 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.21 |
Mean z-score | -2.38 |
Structure conservation index | 0.59 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.883018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1108640 93 - 27905053 UAU-GUGGAGCGUUAGAGCUUUCAAACAGUGCUAGCCCAAAAAGUGGGACACCCCCACGCACGAAAGCUUUUG-CAUCUGCUACCUCUGCCCGCU ...-((((.((...(((((((((.....((((...........(((((.....)))))))))))))))))).(-(....)).......)))))). ( -28.20) >DroSec_CAF1 42244 93 - 1 UAU-GUGGAGCGCCAGAGCUUUCGAACAGUGCUAGCCCAAAUAGUGGGACACCCCCACGCACGAAAGCUUUUG-CAGCUGCUACCGCUGCCCGCU ...-((((.((((.((((((((((....((....)).......(((((.....)))))...)))))))))).)-)(((.......))))))))). ( -34.70) >DroSim_CAF1 42267 93 - 1 UAU-GUGGAGCGCCAGAGCUUUCGAACAGUGCUAGCCCAAAUAGUGGGACACCCCCACGCACGAAAGCUUUUG-CAGCUGCUACCGCUGCCCGCU ...-((((.((((.((((((((((....((....)).......(((((.....)))))...)))))))))).)-)(((.......))))))))). ( -34.70) >DroEre_CAF1 43353 90 - 1 UAU-GUGGAGCGCCAGAGCUUUCGCACAGUGCUAGCCCAAAAAGUGGGACACCCC-ACACACGAAAGCUUUUG-CAGCUGCUACCGCUGCU--CU ...-..(((((((.(((((((((((.....))...........(((((....)))-))....))))))))).)-)(((.......))))))--)) ( -33.50) >DroYak_CAF1 63720 81 - 1 UAU-GUGGAGCGCCAAAGCUUUCUCACAGUGCUAGCCCAAAAAGUGGGACAUCCC--CACACGAAAGCUUUUG-CAGCUGCUACC---------- ...-(((((((((.(((((((((.....((....)).......(((((.....))--)))..))))))))).)-).))).)))).---------- ( -29.00) >DroAna_CAF1 40812 83 - 1 GAGCAAUGAGCGCCAAAGCUCCAACACAGUGCUAGCCAUAAAAGUGGGACACCCUC-------AAAGCUUUGGUCAGCUGUUUCUUGUUC----- ((((((.(((((((((((((........(((....((((....))))..)))....-------..))))))))).....)))).))))))----- ( -22.44) >consensus UAU_GUGGAGCGCCAGAGCUUUCGAACAGUGCUAGCCCAAAAAGUGGGACACCCCCACGCACGAAAGCUUUUG_CAGCUGCUACCGCUGCC__CU ....(((((((.(.(((((((((.....((....)).......(((((.....)))))....))))))))).)...))).))))........... (-17.96 = -18.88 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006