Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,678,887 – 7,678,978 |
Length | 91 |
Max. P | 0.988939 |
Location | 7,678,887 – 7,678,978 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.63 |
Mean single sequence MFE | -15.14 |
Consensus MFE | -13.32 |
Energy contribution | -14.20 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.91 |
Structure conservation index | 0.88 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7678887 91 - 27905053 CAAUGACGCCAACAAUGAAAAAAAUUCGUUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGAUGGCAAUAAA--AAAGAACUGAAGU .......((((((((((((.....))))))))...........(((((((....))))))).......))))......--............. ( -18.40) >DroSec_CAF1 28834 92 - 1 CAAUGACGCCAACAAUGAAAAAAAUUCGCUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGUUGGCCAUAAAA-AAAGAACUAAAGU .......((((((...........((((......)))).....(((((((....))))))).....)))))).......-............. ( -15.50) >DroSim_CAF1 28891 93 - 1 CAAUGACGCCAACAAUGAAAAAAAUUCGUUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGUUGGCAAUAAAAAAAAGAACUAAAGU .......((((((((((((.....)))))).............(((((((....))))))).....))))))..................... ( -18.60) >DroEre_CAF1 29379 90 - 1 CAAUGACGCCAACAAUGAAAA-AAUUUUUAGUAAUGAAAUUAAAUAUGUAUAUUUGCAUACGAGCCGAUGGUAAUAAA--AAAGAACUGUAGU .......((((.(........-...(((((....))))).....((((((....))))))......).))))......--............. ( -9.90) >DroYak_CAF1 29015 90 - 1 CAAUGACGCCAACAAUGAAAA-AAUUCGUAGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGAGGGCAAUGAA--AAAGAACUGCAGU .......(((.((.(((((..-..))))).))...........(((((((....)))))))........)))......--............. ( -13.30) >consensus CAAUGACGCCAACAAUGAAAAAAAUUCGUUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGAUGGCAAUAAA__AAAGAACUGAAGU .......((((((((((((.....))))))))...........(((((((....))))))).......))))..................... (-13.32 = -14.20 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:24 2006