Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,678,092 – 7,678,230 |
Length | 138 |
Max. P | 0.998505 |
Location | 7,678,092 – 7,678,212 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.41 |
Mean single sequence MFE | -20.85 |
Consensus MFE | -6.58 |
Energy contribution | -7.18 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.32 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7678092 120 - 27905053 GCUGUCCUAGUUAAGAAGACCUAAAAUAGGUCAGUUCUUUGAAAAAUGUUUUUAAAAUAACAGAGGAAAAGUAAGAACAUUAUAAAUAACAAAAACUCGAGGGAACCCUAUUUAAUGAUA ..((((...((((....((((((...)))))).((((((.......((((........))))..........))))))........)))).........(((....))).......)))) ( -19.83) >DroSec_CAF1 28052 108 - 1 GCUUUCCUAGUUAAGAAGACCUAAAAUAGGUCAGUUCUUUGAAAUAUGUUUUCAAAGUAACAUAGGGAAAUUAAGAUGAUUAUAAAUAACAAAAAC------------UAUUUAAUGAUA ..(((((((........((((((...)))))).(((((((((((.....)))))))).))).))))))).........((((((((((........------------))))).))))). ( -24.80) >DroSim_CAF1 27763 108 - 1 GCUGUCCUAGUUAAUCAGACCUAAAAUAGGUCAGUUUUUCGAAAUAUGUUUUCCAAGUACCAUAGGAAUAUUAAGAUCAUUAUAAAUAACAAAAAC------------UAUUUAAUGAUA ....(((((........((((((...)))))).((.(((.((((.....)))).))).))..)))))........(((((((..((((........------------))))))))))). ( -18.10) >DroEre_CAF1 28596 94 - 1 GCUGUCCUAGUUUAGAAGCCCUAAAAUAGGUCAG--------------------------CAUACUAAAAUUAAUAACAUAAUAAAUAACAAGAACUCGAGGCAACCCUAUUUAAUGAUA ((((.((((.(((((.....))))).)))).)))--------------------------)................(((..((((((....(....)(.(....).))))))))))... ( -17.30) >DroYak_CAF1 28182 120 - 1 GCUGUCCUAGUUUAGAAGACCUAAAAUAGGUCAGUUCUAUGAAAUAUUUAGUCCAAGUAACACAGGGAAAUUAGGAACAUAAUAAAUAAGAUAAACUCGGGGAAAGCCUAUUUAAUGAUA (((.((((((((((...((((((...)))))).(((((.(((.....))).(((..(.....)..))).....))))).............))))))..)))).)))............. ( -24.20) >consensus GCUGUCCUAGUUAAGAAGACCUAAAAUAGGUCAGUUCUUUGAAAUAUGUUUUCAAAGUAACAUAGGAAAAUUAAGAACAUUAUAAAUAACAAAAACUCG_GG_AA_CCUAUUUAAUGAUA ((((.((((.((.((.....)).)).)))).))))..................................................................................... ( -6.58 = -7.18 + 0.60)
Location | 7,678,132 – 7,678,230 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.16 |
Mean single sequence MFE | -23.26 |
Consensus MFE | -13.39 |
Energy contribution | -15.32 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.21 |
Mean z-score | -2.73 |
Structure conservation index | 0.58 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7678132 98 - 27905053 -------CAAAAA---------------UUUAUUUUUAUAGCUGUCCUAGUUAAGAAGACCUAAAAUAGGUCAGUUCUUUGAAAAAUGUUUUUAAAAUAACAGAGGAAAAGUAAGAACAU -------......---------------(((((((((....((((.....(((((((((((((...))))))......((....))..)))))))....))))...)))))))))..... ( -17.40) >DroSec_CAF1 28080 98 - 1 -------ACUAAA---------------UUUAUUUUGAAAGCUUUCCUAGUUAAGAAGACCUAAAAUAGGUCAGUUCUUUGAAAUAUGUUUUCAAAGUAACAUAGGGAAAUUAAGAUGAU -------......---------------.(((((((((....(((((((........((((((...)))))).(((((((((((.....)))))))).))).))))))).))))))))). ( -26.80) >DroSim_CAF1 27791 98 - 1 -------ACAAAA---------------UUUAUUUUGAAAGCUGUCCUAGUUAAUCAGACCUAAAAUAGGUCAGUUUUUCGAAAUAUGUUUUCCAAGUACCAUAGGAAUAUUAAGAUCAU -------...(((---------------(.((((((((((((((.((((.................)))).))).))))))))))).))))(((..........)))............. ( -18.63) >DroYak_CAF1 28222 120 - 1 AUUCAUUUCUAAAACUGUUUUUCAGUUUUCUAUCUUUGUGGCUGUCCUAGUUUAGAAGACCUAAAAUAGGUCAGUUCUAUGAAAUAUUUAGUCCAAGUAACACAGGGAAAUUAGGAACAU .....((((((((((((.....))))).....((((((((((((.((((.(((((.....))))).)))).)))).........(((((.....))))).))))))))..)))))))... ( -30.20) >consensus _______ACAAAA_______________UUUAUUUUGAAAGCUGUCCUAGUUAAGAAGACCUAAAAUAGGUCAGUUCUUUGAAAUAUGUUUUCAAAGUAACAUAGGAAAAUUAAGAACAU ................................(((((((.....((((.........((((((...)))))).(((((((((((.....)))))))).)))..))))..))))))).... (-13.39 = -15.32 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:21 2006