Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,673,782 – 7,673,884 |
Length | 102 |
Max. P | 0.878013 |
Location | 7,673,782 – 7,673,884 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -15.52 |
Energy contribution | -16.28 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.16 |
Mean z-score | -2.28 |
Structure conservation index | 0.64 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7673782 102 - 27905053 AAAUUAAAUCUUAAGUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGAUGAUGCUCAUGCAUAUGUAUGGGCAUCCGCA .....................................(((((((....)))))))(((---((.....)))))..(((((((((((....))))))))))).... ( -25.80) >DroSec_CAF1 23737 102 - 1 AAAUUAAAUCUUAAAUCCCACUCGUAAUGACCAAGAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGACGAUGCUCAUGCAUAUGUAUGGGCAUCCGCA ...................((((...........))))((((((....))))))((((---((.....)))).))(((((((((((....))))))))))).... ( -28.00) >DroSim_CAF1 23466 102 - 1 AAAUUAAAUCUUAAAUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGAUGAUGCUCAUGCAUAUGUAUGGGCAUCCACA .....................................(((((((....)))))))(((---((.....)))))..(((((((((((....))))))))))).... ( -25.80) >DroEre_CAF1 24083 98 - 1 ACAUUAGAUGUUAAAUCC-ACUCGUAAUGACCAACAGUUUUCCAAUUUUAGAGAGCAG---GGCACCACCCUG---AUGCUCAUGCAUAUGUAUAGGCAUCGACA .(((((((.((.......-)))).))))).......((((((........))))))((---((.....))))(---((((..((((....))))..))))).... ( -24.00) >DroYak_CAF1 23421 87 - 1 AAAUAAAGUUCUAAAUCC-------------CA--AGUUGUCUAAUUUUUGAGAACAGAAAGGCACCACCCUG---AUGCUCAUGCAUAUGUAUAGGCAUCGACG .......(((........-------------..--.(.(((((...(((((....)))))))))).).....(---((((..((((....))))..)))))))). ( -18.10) >consensus AAAUUAAAUCUUAAAUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG___GGCACCACCCUGA_GAUGCUCAUGCAUAUGUAUGGGCAUCCACA ....................................((((((((....))))))))...................(((((((((((....))))))))))).... (-15.52 = -16.28 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:20 2006