Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,673,099 – 7,673,194 |
Length | 95 |
Max. P | 0.795435 |
Location | 7,673,099 – 7,673,194 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 94.48 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -21.52 |
Energy contribution | -22.05 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.03 |
Mean z-score | -1.64 |
Structure conservation index | 0.87 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7673099 95 + 27905053 GGCGGUUGAGCAAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA (((((.((.((((((-((..((((......))))..))).........(((...((((.....)))).))).........))))).))..))))). ( -26.60) >DroSec_CAF1 23080 95 + 1 GGCGGUUGAGCAAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA (((((.((.((((((-((..((((......))))..))).........(((...((((.....)))).))).........))))).))..))))). ( -26.60) >DroSim_CAF1 22782 95 + 1 GGCGGUUGAGCAAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA (((((.((.((((((-((..((((......))))..))).........(((...((((.....)))).))).........))))).))..))))). ( -26.60) >DroEre_CAF1 23311 95 + 1 GGCGGUUGAGCCAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA (((((((((((....-..)).)))))..((((..((((((((((......)))))....)))))..)))).......((((......)))))))). ( -25.10) >DroYak_CAF1 22606 96 + 1 GGCGGUUGAGCAAAGCCAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA (((((.((.(((((((((..((((......))))..(((.........))).))))...((((....)))).........))))).))..))))). ( -25.10) >DroAna_CAF1 25872 89 + 1 GGAGGUUGCG------CGGCUUGAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCACAGCAUUUGCAUGCAUUUUAGAAUUUGUA-GUUCCGCCG ..........------((((..((((....(((((((....)))))))(((...(((.......))).)))...............-)))).)))) ( -18.80) >consensus GGCGGUUGAGCAAAG_CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA (((((((((((.......)).)))))..((((..((((((((((......)))))....)))))..)))).......((((......)))))))). (-21.52 = -22.05 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:19 2006