Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,672,307 – 7,672,420 |
Length | 113 |
Max. P | 0.996783 |
Location | 7,672,307 – 7,672,420 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -20.42 |
Consensus MFE | -17.33 |
Energy contribution | -17.69 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.46 |
Structure conservation index | 0.85 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7672307 113 + 27905053 ACG--CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCC---UCUUCAUGGGAUUCAU ...--...(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))(((---.......)))...... ( -21.53) >DroSec_CAF1 22314 116 + 1 ACG--CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCCGCUUCUUCAUGGGAUUCAU ...--...(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))((((........))))...... ( -21.33) >DroSim_CAF1 21992 116 + 1 ACG--CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCCGCUUCUUCAUGGGAUUCAU ...--...(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))((((........))))...... ( -21.33) >DroEre_CAF1 22537 110 + 1 AUA--CGCGCAGACAUCUUAUUCCGGCACAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCCCUCCUUAUCUGUUUUCCUCUGCCACUUCCUUGUGCCCCCC-UUUCAUGGGA----- ...--...(((((...........((((.((....)).))))........((((.................))))....)))))(((......)))...(((-......))).----- ( -16.23) >DroYak_CAF1 21803 113 + 1 AUAGACACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCCCUCCUUAUCUGUGUUCCUCUGCAACUACCUUGUGCCCCCCAUUUCGUGGGA----- ..(((.(((((((...........(((((((....)))))))..((....)).................)))))))...)))(((.(......))))..(((((...))))).----- ( -21.70) >consensus ACG__CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCCCCCUCUUCAUGGGAUUCAU ........(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))(((..........)))...... (-17.33 = -17.69 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:18 2006