Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,108,366 – 1,108,485 |
Length | 119 |
Max. P | 0.619233 |
Location | 1,108,366 – 1,108,485 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -46.82 |
Consensus MFE | -26.29 |
Energy contribution | -27.15 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.26 |
Mean z-score | -1.81 |
Structure conservation index | 0.56 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1108366 119 + 27905053 -CGAUCCUGACCGGCACUCACCGUUUCGUGCAUUUCGCCGCUCUCGUCGAGGAGAGCCUCCAGGCUCUGGUCGUCCUUGGUGGGCGAGAGAGGGGGCGUGGGCGCGCGGUUCUUGGCCGA -..........((((....((((...(((((....((((.(((((.((....((((((....))))))..((((((.....)))))))))))))))))...))))))))).....)))). ( -55.20) >DroVir_CAF1 35748 115 + 1 -UGCU----CUUCCCACUCACCGUUUCAUGCAUUUCGCCGCUUUCAUCUAGCAACGCCUCCAAGCUCUGAUCGUCUUUGGUUGGCGAGAGCGGCGGCGUGGGCGAGCGAUUCUUGGCCGU -.(((----(..(((((.....((.....))...(((((((((((.....(...)(((.(((((..(.....)..)))))..)))))))))))))).))))).))))............. ( -40.90) >DroGri_CAF1 48643 119 + 1 -UGAUUCUGUUUCCCACUCACCGUUUCAUGCAUUUCGCUGCUUUCGUCGAGCAACGCCUCCAAGCUCUGAUCAUCUUUGGUAGGCGAGAGCGGCGGCGUCGGUGAGCGAUUUUUCGCCGU -................((((((....((((....(((((((((((((((((...........))))..((((....)))).)))))))))))))))))))))))((((....))))... ( -44.20) >DroWil_CAF1 44449 110 + 1 ----------UCAAAACUCACCGUUUCAUGCAUUUCACCGCUCUCGUCGAGCAGUGCCUCCAGACUCUGAUCAUCCUUGGUGGGUGAUAGAGGCGGUGUGGGUGCACGAUUUUUGGCCGA ----------..........(((..((.(((((((((((((((.....))))...((((((((...)))(((((((.....))))))).))))))))).))))))).))....))).... ( -40.30) >DroMoj_CAF1 37631 115 + 1 -UGCU----CUACCCACUCACCGUUUCAUGCAUUUCACCGCUUUCGUCGAGCAAUGCCUCCAAGCUCUGAUCAUCUUUGGUGGGCGAGAGCGGCGGUGUGGGCGAGCGAUUCUUGACUGA -.(((----(..(((((..(((((.....))......(((((((((((((((...........))))..((((....)))).))))))))))).)))))))).))))............. ( -42.60) >DroAna_CAF1 40550 116 + 1 UCGAUC--GACUG--ACUCACCGUUUCGUGCAUUUCUCCGCUCUCAUCGAGCAGCGCCUCCAGGCUCUGGUCGUCCUUGGUGGGCGAGAGUGGGGGCGUGGGCGAGCGGUUUUUGGCGGC ....((--(.(..--(...((((((.(((.(((.(((((((((((...((.(((.(((....))).))).))((((.....))))))))))))))).))).)))))))))..)..)))). ( -57.70) >consensus _UGAU____AUUCCCACUCACCGUUUCAUGCAUUUCGCCGCUCUCGUCGAGCAACGCCUCCAAGCUCUGAUCAUCCUUGGUGGGCGAGAGCGGCGGCGUGGGCGAGCGAUUCUUGGCCGA .....................((((.(((.(((.((.(((((((((((((((...........))))..((((....)))).))))))))))).)).))).)))))))............ (-26.29 = -27.15 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:28 2006