Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,650,316 – 7,650,436 |
Length | 120 |
Max. P | 0.539871 |
Location | 7,650,316 – 7,650,436 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -41.43 |
Consensus MFE | -30.33 |
Energy contribution | -31.22 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.29 |
Mean z-score | -2.00 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7650316 120 - 27905053 UUAUGCCCGAACAGGUGGAGGUGCUGAUCUUCACGGGCAACCGGAUCACUGAGCUGCCGUGGAAUGUCUUUGGCAGCAUCAACAACUACAAGCAGCUGCGCAUCGUGGACAUGAGCAGCA ((((((((((....(((.((.((((((((....(((....)))))))..((((((((((.((.....)).))))))).))).........)))).)).))).))).)).)))))...... ( -46.40) >DroVir_CAF1 6248 120 - 1 ACAUGCCCGAGCAGGUGGAGAUACUUAUCUUUACGGGCAACUACAUUACGGAGCUGCCAUGGAAUGUCUUUGGCAGCAUCAAUGACUACAAGCAGCUGAAGAUCGUGGACAUGAGCAGCA ...((((((...((((((......))))))...)))))).............(((((((((..(((((((..((.((..............)).))..)))).)))...)))).))))). ( -41.34) >DroPse_CAF1 6494 120 - 1 UCAUGCCCGAGAAGGUGGAGGUGCUGAUCUUCACCGGCAAUCACAUUGCGGAGCUGCCCUGGAACGUGUUCGGGAGCAUCAACGACUACAAGCAGCUCAAGAUCGUGGACAUGAGCAGCA ((((((((((...(((((((((....))))))))).(((((...))))).(((((((((((((.....))))))(((......).))....)))))))....))).)).)))))...... ( -43.90) >DroGri_CAF1 5815 120 - 1 UUAUGCCCGAGCAGGUGGAGAUACUCAUCUUUACGGGCAACUUUAUUACCGAGCUGCCGUGGAACGUCUUUGGUAGCAUCAAUGACUACAAGCAGCUGAAGAUCGUCGACAUGAGCAGCA ...((((((...((((((......))))))...)))))).............(((((((((..(((((((..((.((..............)).))..)))).)))...)))).))))). ( -42.84) >DroMoj_CAF1 5857 120 - 1 ACAUGCCCGAGCAGGUCGAGAUCCUGAUCUUUACGGGAAACUACAUAACGGAGCUGCCAUGGAAUGUCUUUGGCAGCAUCAAUGACUACAAGCAGCUGAAGAUCGUGGACAUGAGCAACA .(((((((((.((((.......)))).(((((((((....)).(((....(((((((((.((.....)).))))))).)).)))..........).))))))))).)).))))....... ( -36.60) >DroAna_CAF1 10087 120 - 1 UUAUGCCCGAGCAGGUGGAGGUGCUGAUCUUCACGGGCAACCGAAUUACCGAACUUCCUUGGAAUGUGUUCGGCAGCAUCAACGAUUACAAGCAAUUGCGUAUUGUCGACAUGAGCAGCA ...(((....((..(((..(((((((.......(((....))).....(((((((((....)))...)))))))))))))..((((.....((....)).....)))).)))..)).))) ( -37.50) >consensus UCAUGCCCGAGCAGGUGGAGAUGCUGAUCUUCACGGGCAACCACAUUACGGAGCUGCCAUGGAAUGUCUUUGGCAGCAUCAACGACUACAAGCAGCUGAAGAUCGUGGACAUGAGCAGCA ...(((((......((((((((....))))))))))))).............(((((((((..(((((((((((.((..............)).)))))))).)))...)))).))))). (-30.33 = -31.22 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006