Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,634,271 – 7,634,363 |
Length | 92 |
Max. P | 0.989527 |
Location | 7,634,271 – 7,634,363 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.62 |
Mean single sequence MFE | -21.16 |
Consensus MFE | -10.10 |
Energy contribution | -11.22 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.37 |
Mean z-score | -2.45 |
Structure conservation index | 0.48 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7634271 92 - 27905053 CAUUACUUUGGUGCUAGCUCU---AUAGAUGAUGCUUUAAUAGGUCAUAGAGAUAUACUUUCUUGCUAUGGUCAUAAAGUUAC---------UAAGCCAAAUUU ......((((((..(((.((.---...))....((((((...(..((((((((.......)))..)))))..).))))))..)---------)).))))))... ( -17.40) >DroSec_CAF1 10806 92 - 1 UAUUGAUUUGGCGCUAGCUUU---AUAGAUGAUGUUUUAAUAGGCCAUAGAAAUAUACUUUCUUGCUAUGGCCAUAAAGUUAC---------UAAGCUAAAUUU ....((((((((..(((((((---((...(((....)))...((((((((...............))))))))))))))))).---------...)))))))). ( -25.76) >DroSim_CAF1 10892 92 - 1 UAUUAAUUUGGCGCUAGCUUU---AUAGGUGAUGUUUUAAUAGGCCAUAGAAAUAUACUUUCUUGCUAUGGCCAUAAAGUUAC---------UAAGCUAAAUUU ....((((((((..(((((((---((...(((....)))...((((((((...............))))))))))))))))).---------...)))))))). ( -25.26) >DroEre_CAF1 11177 72 - 1 UAUUAAUUUGGCGCUAGCUUU---AUAUAUGAUGCUUUAAUAGGCCAUAGAUAUAG--------------------CAGCAAU---------UUAGCUAAAUUU ....(((((((((((.(((.(---((.((((..((((....)))))))).))).))--------------------))))...---------...)))))))). ( -17.20) >DroYak_CAF1 10653 104 - 1 UACUUAUUUGGCGCUGGCUUUGUAAUAGAUGAUGUUUUAAUAGGUCAUAGAGAUAUAAUUUCUUCCUAUGCUCAUAAAGCAAUUUGCUUGUUUUAGCUAAAUUU .....(((((((((.(((.((((.....((((.((....(((((....((((((...)))))).)))))))))))...))))...))).))....))))))).. ( -20.20) >consensus UAUUAAUUUGGCGCUAGCUUU___AUAGAUGAUGUUUUAAUAGGCCAUAGAAAUAUACUUUCUUGCUAUGGCCAUAAAGUUAC_________UAAGCUAAAUUU ....((((((((...(((...............)))......((((((((...............))))))))......................)))))))). (-10.10 = -11.22 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:03 2006