Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,631,967 – 7,632,065 |
Length | 98 |
Max. P | 0.531808 |
Location | 7,631,967 – 7,632,065 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -18.82 |
Energy contribution | -18.57 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.27 |
Mean z-score | -2.11 |
Structure conservation index | 0.61 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7631967 98 - 27905053 UCGGCGAUCGGCA---ACGCGAUCGCAAUCGCGAUCG---GAGUAAUCAGAAAGUCGAGCGAAUCAUUCACGAUGAAGAGUUUG-GCGAGGAGAACGUCGAGUUG ((((((.(((...---.).(((((((....)))))))---((....)).....(((((((...(((((...)))))...)))))-)).....)).)))))).... ( -34.00) >DroPse_CAF1 8032 98 - 1 UUGGCGAUCGACA---ACGCGAUCGUAAUCGCGAUCG---CAGCAAUCAGAAAGUCGAACGAAUUAUUCACGAUGAAGAGUUUG-GCGAAGAGAAUGUCGAGCUG ..(((..((((((---..((((((((....)))))))---)............(((((((...(((((...)))))...)))))-))........))))))))). ( -32.00) >DroYak_CAF1 8700 98 - 1 UUGGCGAUCGGCA---ACGCGAUCGCAAUCGCGAUCG---GAGUAAUCAGAAAGUCGAGCGUAUCAUUCACGAUGAAGAGUUUG-GCGAGGAGAACGUCGAGCUG ...(((.(((((.---...(((((((....)))))))---((....)).....))))).))).(((((...)))))..((((((-(((.......))))))))). ( -34.50) >DroMoj_CAF1 18136 104 - 1 UUGCCACUCGCGAUAAUCGUGAUCGCAAUGGCAAAGCCAAAACCAAACAGCAAGUCGAACGUAUCAUACACGAUGAAGAGUUUG-GUGAAGAGAAUGUCGAACUG ((((((...(((((.......)))))..)))))).......(((((((.....((((...(((...))).)))).....)))))-)).................. ( -23.90) >DroAna_CAF1 8468 92 - 1 UCGGCGAUCGGCA---ACGCGAUCGU------GAUCG---CAAUAAUCACAAAGUCGAGCGAAUUAUUCACGAUGAAGAGUUUG-GCGAGGAGAACGUCGAACUG ((((((((((...---...)))))((------(((..---.....)))))...)))))........(((.....))).((((((-(((.......))))))))). ( -27.00) >DroPer_CAF1 8020 99 - 1 UUGGCGAUCGACA---ACGCGAUCGUAAUCGCGAUCG---CAGCAAUCAGAAAGUCGAACGAAUUAUUCACGAUGAAGAGUUUGGGCGAAGAGAAUGUCGAGCUG ..(((..((((((---..((((((((....)))))))---).............(((..((((((.(((.....))).))))))..)))......))))))))). ( -34.00) >consensus UUGGCGAUCGGCA___ACGCGAUCGCAAUCGCGAUCG___CAGCAAUCAGAAAGUCGAACGAAUCAUUCACGAUGAAGAGUUUG_GCGAAGAGAACGUCGAGCUG ((((((.((..........(((((((....)))))))................(((((((...((((.....))))...))))).)).....)).)))))).... (-18.82 = -18.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006