Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,630,672 – 7,630,771 |
Length | 99 |
Max. P | 0.808766 |
Location | 7,630,672 – 7,630,771 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -16.87 |
Consensus MFE | -11.88 |
Energy contribution | -11.72 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.21 |
Mean z-score | -1.29 |
Structure conservation index | 0.70 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7630672 99 - 27905053 AAAA-AAAAA---AAAGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUCGGGAAGUCGUAGGUGAGAUUUGAAUAC----- ....-.....---........((.....((((((.((((((....))))))(((.((........)).)))......)).)))).....))............----- ( -15.30) >DroSec_CAF1 7314 102 - 1 AAAA-AAAAAGAAGAAGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUCGGGAAGUCGUAGGUGAGAUUUGAAUAC----- ....-................((.....((((((.((((((....))))))(((.((........)).)))......)).)))).....))............----- ( -15.30) >DroSim_CAF1 7365 103 - 1 AAAAAAAAAAGAAGAAGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUUGGGAAGUCGUAGGUGAGAUUUGAAUAC----- ...................(((((...........))))).....(((((.(((.((........)).))).)))))..(((((........)))))......----- ( -15.80) >DroEre_CAF1 8190 91 - 1 GAA------------AGGAGGCAACCAAUGUUCCAUUGCUAAAGGUAGUAGGGUGACGAAAAAGAGUGACCGUAUAGGGAACUCGUAGGUGAGAUAUGAAUAU----- ...------------........(((..((((((.((((((....)))))))).)))).....((((..((.....))..))))...))).............----- ( -19.70) >DroYak_CAF1 7482 97 - 1 AAAA-----------AGAAGGCAGCAAAUAUUCCAUUGCUAAAGGCAGUAGGGUGGCGUAAAAGAGUGACCGUAUCGGUAACUCGUAGGUGAGUUAUGAAUAUUCCAA ....-----------....((.....(((((((.(((((.....)))))..(((.((........)).)))......((((((((....))))))))))))))))).. ( -22.20) >DroAna_CAF1 7099 84 - 1 AAAA-CAAAACAA----AAAGCA------UUUUCAUUGCUAACGACAGUAGGGUGGCGUAAAAAAGUGACCAUAUCGGGAACCAAUACGUAAGAU------------- ....-........----....((------((((.(((((....).))))))))))(((((.....((..((.....))..))...))))).....------------- ( -12.90) >consensus AAAA_AAAAA_____AGAAAGCAACAAAGAUUCCAUUGCUAAAGGUAGUAGGGUGGCGAAAAAGAGUGACCGUAUCGGGAACUCGUAGGUGAGAUUUGAAUAC_____ ..............................(((((((((.....)))))..(((.((........)).))).....))))............................ (-11.88 = -11.72 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:01 2006