Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,629,240 – 7,629,348 |
Length | 108 |
Max. P | 0.614377 |
Location | 7,629,240 – 7,629,348 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.32 |
Mean single sequence MFE | -20.59 |
Consensus MFE | -3.20 |
Energy contribution | -4.24 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.21 |
Mean z-score | -1.58 |
Structure conservation index | 0.16 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614377 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7629240 108 - 27905053 UGAAGUAGUUCCAUCAUAUCGAAAAUAAUCCAUGACACGGUUCCCAUUCCAAAAGUGAAGUGGAAAAUAAGCGAAAGUAACCAAGUGAACUUA---AUUGGCGAUGGGAAA ........(((((((...(((.......(((((..(((((........))....)))..))))).......)))..((....(((....))).---....))))))))).. ( -22.54) >DroSec_CAF1 5933 94 - 1 --------UUCCUUCAUAUCGAAAAUAAUCCAUGACACGGUU------CCAAAAGUGAAGUGGAAAAUAAGCGAAAGUAACCAAGUGAACUUA---AUUGGCGAUGUGAAA --------....(((((((((..(((..(((((..(((....------......)))..)))))......((....))....(((....))).---)))..))))))))). ( -24.50) >DroSim_CAF1 5986 82 - 1 UGAAGUAGUUCCUUCAUAUCGAAAAUA--------------------------AGUGAAGUGGAAAAUAAGCGAAAGUAACCGAGUGAACUUA---AUUGGCGAUGUGAAA ............(((((((((..((((--------------------------(((....(((.......((....))..))).....)))).---)))..))))))))). ( -18.20) >DroEre_CAF1 6772 106 - 1 UGAAGUAGUUCGUUUAUAUCGAAAAUAAUUCCUGACACGGUUCCCAUUUCGAAAGUGAAGUGGAAAAUAUUCGAAAGUAACCAAGUGAAUUCG---AUUGGCAGUG-G-AA .(((....((((.......)))).....)))....(((((((.((((((((....))))))))........(....).))))..((.(((...---))).)).)))-.-.. ( -19.40) >DroYak_CAF1 5984 99 - 1 UGAAGUAGUUCCUUCAUAUCGAAAAUAACUCCUCACUCGAUUCCCAUUUCAACAGUGAAGUGCAA----------ACUAACCAAGUGAACUUGAUGAUUGGCAGUG-G-AA (((((......))))).............(((.(..((((((..(((((((....)))))))...----------......((((....))))..))))))..).)-)-). ( -18.30) >consensus UGAAGUAGUUCCUUCAUAUCGAAAAUAAUCCAUGACACGGUUCCCAUUCCAAAAGUGAAGUGGAAAAUAAGCGAAAGUAACCAAGUGAACUUA___AUUGGCGAUG_GAAA ............(((.(((((.................................................((....))..((((.............))))))))).))). ( -3.20 = -4.24 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:00 2006