Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,104,717 – 1,104,814 |
Length | 97 |
Max. P | 0.991939 |
Location | 1,104,717 – 1,104,814 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 73.66 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -12.27 |
Energy contribution | -14.16 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.21 |
Mean z-score | -2.70 |
Structure conservation index | 0.44 |
SVM decision value | 2.30 |
SVM RNA-class probability | 0.991939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1104717 97 + 27905053 CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAAAUAG--UCGCAGAUAG------CUAGCUAAGCCGCAUGAAAGGUCGAGAGAUC-UGAAUGGCACAACA .(((..((((.(((....(..(((((((((...........)--))))))))..------)))))))))))((.....(((((....))))-).....))...... ( -29.20) >DroSec_CAF1 38290 97 + 1 CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAGAUAG--UCGCAGAUAG------CUGGCUAAGCCGCAUGAAAGGUCGAGAGAUC-UGAAUGGCAAUACA .(((..((((((......(..(((((((((...........)--))))))))..------).)))))))))((.....(((((....))))-).....))...... ( -31.30) >DroSim_CAF1 38294 97 + 1 CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAGAUAG--UCGCAGAUAG------CUGGCUAAGCCGCCUGAAAGGUCGAGAGAUC-UGAAUGGCAAUACA .(((..((((((......(..(((((((((...........)--))))))))..------).)))))))))(((....(((((....))))-)....)))...... ( -34.40) >DroEre_CAF1 39746 91 + 1 CGGUAAUUAGUCUGAUAUGAAAUCUGCGAUAG-U-CAGAUAG--UCGCAGACAG----------CUAAGCCGCAUGAAAGGUCGCGAGAUC-UGAAUGGCAGCUCA .(((..((((.(((........((((((((..-.-......)--))))))))))----------)))))))((.....(((((....))))-).....))...... ( -28.10) >DroYak_CAF1 52780 79 + 1 UGGCAAUUAGUCUGAUUUAAAAUCUGCUUUAAAA-UCGUUCG--UCGGAGAUAC----------CUAAUCCGUAUGAAAGGUCGAGAGAUC-U------------- .(((.....))).(((((.(((.....))).)))-)).((((--(((((.....----------....)))).)))))(((((....))))-)------------- ( -16.70) >DroAna_CAF1 36606 102 + 1 CUGCAAUUAGUCUGAUAC-AGAUAUGCGAUAAAGUGCGACGACUUUGUUGAUAUUCCACAUCAGUUAAGCUGCAUGCAAGGUCGAGCGAUAGUGCAUGGGAGA--- ..(((.((((.(((((..-.(((((.(((((((((......))))))))))))))....)))))))))..)))(((((..(((....)))..)))))......--- ( -29.00) >consensus CGGCAAUUAGUCUGAUAUGAAAUCUGCGAUAAAAUCAGAUAG__UCGCAGAUAG______CU_GCUAAGCCGCAUGAAAGGUCGAGAGAUC_UGAAUGGCAAAACA ((((..(((((..........((((((((...............))))))))...........)))))))))(((....((((....))))....)))........ (-12.27 = -14.16 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:26 2006