Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,611,189 – 7,611,289 |
Length | 100 |
Max. P | 0.784227 |
Location | 7,611,189 – 7,611,289 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.74 |
Mean single sequence MFE | -23.91 |
Consensus MFE | -16.73 |
Energy contribution | -15.98 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.31 |
Mean z-score | -1.74 |
Structure conservation index | 0.70 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7611189 100 - 27905053 AAUGCGAAUUGUAAGCAGUACGAGCAGGCUAAGAGCAGCUCAUGUGAUUGCAUUGGUAUGAGCAAUGCUAACAACAAUCUAAUCGGUAAGCUAUAUAACA ........((((((((..(((((((..((.....)).))))....(((((..(((((((.....)))))))...)))))......))).))).))))).. ( -22.60) >DroVir_CAF1 3844 92 - 1 AAUGACAAUCGCAAACACUAUGAGCAGGCCAAGAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCAAUGCCAACAAUAAUUUGAUUGGUAAGUC-------- ((((.((((((((........((((..((.....)).)))).))))))))))))(((((.....)))))..((((......)))).......-------- ( -25.80) >DroGri_CAF1 4435 96 - 1 -AUCCCAAUCGCAAACAAUAUGAACAGGCCAAAAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCCAUGCCAACAAUAAUCUAAUUGGUAACUGG--CAAU- -.........((...(.....)..((((((((..((((...))))(((((..((((((((...))))))))...)))))...)))))..))))--)...- ( -24.10) >DroSec_CAF1 7999 98 - 1 AAUGCGAAUCGCAAGCAGUAUGAGCAGGCUAAGAGUAGCUCCUGUGAUUGCAUUGGCAUGAGCAAUGCUAACAACAACCUCAUCGGUAAGACA--UAACA ..((((...)))).(((((....((((((((....))))..)))).))))).(((((((.....))))))).....(((.....)))......--..... ( -23.60) >DroSim_CAF1 6898 100 - 1 AAUGCGAAUCGCAAGCAGUAUGAGCAGGCUAAGAGUAGCUCCUGUGAUUGCAUUGGAAUGAGCAAUGCUAACAACAACCUGAUCGGUAAGAUAUAUAGCA ..(((..((..((((((((....((((((((....))))..)))).))))).)))..))..))).(((((......(((.....)))........))))) ( -22.34) >DroMoj_CAF1 3910 92 - 1 AAUACCAAUCGCAAACAAUAUGAGCAGGCCAAAAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCAAUGCCAACAAUAACUUAAUUGGUGAGUC-------- ..(((((((.((((.......((((..((.....)).))))......)))).(((((((.....)))))))..........)))))))....-------- ( -25.02) >consensus AAUGCCAAUCGCAAACAGUAUGAGCAGGCCAAGAGCAGCUCCUGCGAUUGCAUUGGCAUGAGCAAUGCCAACAACAACCUAAUCGGUAAGUCA__UAAC_ ..(((.(((((((........((((..((.....)).)))).))))))))))(((((((.....))))))).....(((.....)))............. (-16.73 = -15.98 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006