Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,608,013 – 7,608,121 |
Length | 108 |
Max. P | 0.706467 |
Location | 7,608,013 – 7,608,121 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 85.74 |
Mean single sequence MFE | -22.85 |
Consensus MFE | -19.22 |
Energy contribution | -19.22 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.80 |
Structure conservation index | 0.84 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7608013 108 - 27905053 UUCGUAAUCAUUUGGACUUAAAAUUUUAGAUGGGUUCCACCAUUAGUACUCCUACCCGUGGCACUCAACAUUCAUAUUCCUCGUUAAGCUCUACGCCUACUAAGCAAA ............(((((((((.....(((((((((.((((...(((.....)))...)))).)))))....)).)).......))))).)))).((.......))... ( -14.40) >DroSec_CAF1 3442 108 - 1 UUCGUAAUAAUUUUGAAUUGAAAUUUUAGAUGGGUUCCACCAUUAGUACUCCAACCCGUGGUACUCAACAUUCAUAUUCCUCGUUGAGCUCCACGCCCACUAAGCAAA ...((...((((((.....))))))((((.(((((..........((......))..((((..((((((.............))))))..)))))))))))))))... ( -22.22) >DroSim_CAF1 3448 108 - 1 UUCGUAAUAAUUUUGACUUGAAAUAUUAGAUGGGUUCCACCAUUAGUACUCCAACCCGUGGUACUCAACAUUCAUAUUCCUCGUUGAGCUCCACGCCCACUAAGCAAA ...........((((.((((...((((.(((((......)))))))))........(((((..((((((.............))))))..))))).....)))))))) ( -23.52) >DroEre_CAF1 473 108 - 1 UUCGUAAUAAAAUUGAUUUGAAAUUUUAGAUGGGUUCCACCAUUAGUACGCCAACGCGUGGCACUCAGCAUUCAUAUUCAUCGUUGAGCUCCACGCCCACUAAGCAAG ..((((.(((((((.......)))))))(((((......)))))..)))).....((((((..((((((.............))))))..))))))............ ( -27.62) >DroYak_CAF1 473 108 - 1 UUCGUAAUAAUAUUGACUUGAACUUUUAGAUGGGUUCCACCAUCAGUACGCCAACGCGUGGCACUCAGCAUUCAUAUUCAUCGUUGAGCUCCACGCCCACAAAGCAAG ............(((..(((........(((((......)))))...........((((((..((((((.............))))))..))))))...)))..))). ( -28.72) >DroAna_CAF1 483 106 - 1 UUACUAAAAACUACCUCUUUAA--UUCAGAUGGGCUCCACCAUAAGUACACCAACGCGUGGCACUCAGCAUUCGUACUCUUCGCUGAGCUCCACACCCACUAAGAACU ......................--...((.((((...........((......))..((((..((((((.............))))))..)))).))))))....... ( -20.62) >consensus UUCGUAAUAAUUUUGACUUGAAAUUUUAGAUGGGUUCCACCAUUAGUACUCCAACCCGUGGCACUCAACAUUCAUAUUCCUCGUUGAGCUCCACGCCCACUAAGCAAA .........................((((.(((((..........((......))..((((..((((((.............))))))..)))))))))))))..... (-19.22 = -19.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:57 2006