Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,586,612 – 7,586,723 |
Length | 111 |
Max. P | 0.727460 |
Location | 7,586,612 – 7,586,723 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.90 |
Mean single sequence MFE | -27.26 |
Consensus MFE | -19.08 |
Energy contribution | -19.92 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.08 |
Mean z-score | -2.13 |
Structure conservation index | 0.70 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7586612 111 + 27905053 GUUUAAGAGAGCGGCACAGGAAGAGACCGGUGCGGGA--GAGCGUUACAUGAUGCAAUUAAGUUCUUGUAAAAAGAGAGUACACAGGAAGAAAUAUGGUUGUGGCAUAUGAUU .((((.((((((.((((.((......)).))))....--..(((((....)))))......)))))).))))......((.(((((..(......)..)))))))........ ( -24.20) >DroSec_CAF1 8032 111 + 1 GUUUAAGAGAGCGGCACAGGAAAAGACCGGUGCGCGA--GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGAAAGAAAUAUGAUUGUGGCAUUUGAUU .........(((.((((.((......)).))))((..--..))))).((.(((((......((((((.......)))))).(((((..(......)..))))))))))))... ( -27.20) >DroSim_CAF1 8094 111 + 1 GUUUAAGAGAGCGGCACAGGAAAAGACCGGUGCGCGA--GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGAAAGAAAUAUGAUUGUGGCAUUUGAUU .........(((.((((.((......)).))))((..--..))))).((.(((((......((((((.......)))))).(((((..(......)..))))))))))))... ( -27.20) >DroEre_CAF1 8809 111 + 1 GAUUAAGAGUACAGCCCUGGAAAAGACCGGUGCGCGAAUGAGCGUUGCAUGAUGCAAUUAAGCUCUUGUAAAUAAAGAGUAUACAGGCAGAAAUAUGAAGGUAGUGUUUGA-- ......((((((.(((((((......)))).((((......))))..((((.(((...((.((((((.......)))))).))...)))....))))..))).))))))..-- ( -24.20) >DroYak_CAF1 8198 109 + 1 GAUUAAGAGAGCGGCACUGGAAAAGACCGGUGCGCAA--GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGGUAGAAAAAUGGUUGUAGUAUUUGG-- ..(((.((((((.(((((((......)))))))....--..(((((....)))))......)))))).))).....((((((((((.((......)).)))).))))))..-- ( -33.50) >consensus GUUUAAGAGAGCGGCACAGGAAAAGACCGGUGCGCGA__GAGCGUUACAUGAUGCAAUUAAGCUCUUGUAAAAAGAGAGUACACAGGAAGAAAUAUGAUUGUGGCAUUUGAUU ..(((.((((((.((((.((......)).))))........(((((....)))))......)))))).)))..........(((((..(......)..))))).......... (-19.08 = -19.92 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006