Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,104,573 – 1,104,666 |
Length | 93 |
Max. P | 0.528409 |
Location | 1,104,573 – 1,104,666 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 88.06 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -23.37 |
Energy contribution | -23.86 |
Covariance contribution | 0.49 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.82 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1104573 93 + 27905053 CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAAUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGGGCAAUCCAAAU .(..(((.....((((((.(((((((............)))))))...((((((((........))))))))....)))))).)))..).... ( -32.00) >DroSec_CAF1 38146 93 + 1 CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAAUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGUGCAAUCCAAAU .(..(((....((((..(.(((((((............)))))))...((((((((........))))))))...)..)))).)))..).... ( -28.70) >DroSim_CAF1 38150 93 + 1 CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAGUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGUGCAAUCCAAAU .(..(((....((((..(.(((((((............)))))))...((((((((........))))))))...)..)))).)))..).... ( -28.70) >DroEre_CAF1 39616 82 + 1 CGAGUUGAAGAACCCCUGAGUGGCGCUCCGCGAGUAUUGCGCCAUGAUUUCGAU-----------UGCCGAAGUACUAGGGCUCCAUCCAAAU .(((.........(((((.(((((((..(....)....))))))).((((((..-----------...))))))..))))))))......... ( -23.80) >DroYak_CAF1 52636 93 + 1 CGAGUUGAAGAGCCCCUGAGUGGCGCUCUGCGAGUAUUGCGCCAUGACUUUGAUUCGCCAUCGAGUGUCGAAAUACUAGGGUUCAAUAUAAAU .........((((((..(.(((((((..((....))..)))))))(((((((((.....)))))).)))......)..))))))......... ( -29.10) >consensus CGAGUUGAAGAACCCCUGAGUGGCGCUCAGCGAGUAUUGCGCCAUGACUUUGAUACGCCAUCGAGUGUCGAAACACUAGGGUGCAAUCCAAAU .............(((((.(((((((............)))))))...((((((((........))))))))....)))))............ (-23.37 = -23.86 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:25 2006