Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,578,160 – 7,578,258 |
Length | 98 |
Max. P | 0.515186 |
Location | 7,578,160 – 7,578,258 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 96.98 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -17.14 |
Energy contribution | -17.45 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.56 |
Structure conservation index | 0.92 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7578160 98 - 27905053 AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUUAA---A .......(((((((.....)))))))...(((((..........((((...(((......)))..))))....((((((.....)))))))))))..---. ( -19.60) >DroSec_CAF1 10188 98 - 1 AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUAUUCUUAA---A ........((((((....(((((((((((....)))(((.....((((...(((......)))..))))....))).))))))))..))))))....---. ( -19.80) >DroSim_CAF1 10624 98 - 1 AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUUAA---A .......(((((((.....)))))))...(((((..........((((...(((......)))..))))....((((((.....)))))))))))..---. ( -19.60) >DroYak_CAF1 10238 101 - 1 AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACCCUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUAAAAAAA .......(((((((.....)))))))....((((.........(((...(((.......)))...))).....((((((.....))))))))))....... ( -15.80) >consensus AUAAAAACGAAUACGAAAAGUGUUUGGUCAAGAGAUGCAUAAAACACUUACGACUUUUCUGUUUUGGUGAAAUUGCUUAAAUACUAAGUACUCUUAA___A .......(((((((.....)))))))...(((((..........((((...(((......)))..))))....((((((.....)))))))))))...... (-17.14 = -17.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:40 2006